Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31913
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 32 0.31
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 1.7
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 2.2
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 28 3.9
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 5.1
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 27 6.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 6.8
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 27 6.8
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 27 8.9
02_04_0293 + 21644415-21644533,21644686-21645118 27 8.9
02_04_0037 + 19104367-19104978 27 8.9
01_03_0196 - 13696056-13697448,13697676-13697713 27 8.9
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 263 VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQXTSPLPTN 382
V G++ PK L+ F L + +NI S++ SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 92 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPXMRAPPNHDY 214
PY P P ++P + H+ P + PPNHDY
Sbjct: 794 PYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 107 PLVLPGAKVRREPGPTESYLRHHPNPXMRAPP 202
P PG R PGP + P+P R+PP
Sbjct: 50 PSQAPGPAARHAPGPARHHGAPAPHPGRRSPP 81
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +2
Query: 143 PGPTESYLRH-HPNPXMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-FNSPI 316
P P +Y+ H PNP + + P V S + G P + Q FN P
Sbjct: 136 PNPQPAYMSHPKPNPHVFSSP--------CSPVVFNSPSNHLAGSTTPTPNNLQVFNGPR 187
Query: 317 NLYSEQNIANSIRQXTSPLPTN 382
N + + +N + T+P P N
Sbjct: 188 NPHVSNSPSNHLAGSTTPTPNN 209
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 232 FH--KGITVVVVRRCPHXWVGVMTQVTLCGARLPSDLSSREHERS 104
FH KGIT V +RRCP+ +T++++ G P +S H+ S
Sbjct: 1090 FHNLKGITWVNLRRCPN-----LTRISIDGFSQPHVMSKPVHDNS 1129
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 86 NWPYRTTPLVLPGAKVRREPGPTESYLRHHPNP 184
NWP P + PGA PGP + P P
Sbjct: 264 NWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMP 296
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 101 TTPLVLPGAKVRREPGPTESYLRHHPNPXMRAPP 202
T PL +P P T + L +PNP PP
Sbjct: 25 TPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 196 CPHXWVGVMTQVTLCGARLPSDLSSREH 113
C H WV + Q G RLP +L + H
Sbjct: 721 CIHKWVSGVDQSMCSGCRLPFNLRRKRH 748
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 143 PGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESV 253
P P L+ HP P + PN D ++ + K V +
Sbjct: 265 PPPPPPILQEHPQPVVAVVPNVDEQEVVAKPAVIAKI 301
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 283 RCLFANHSLQHRLCHLLFHKGITVVVVRRC 194
RC +H LQHR C L+ + V RRC
Sbjct: 29 RCGHCHHRLQHRYCSELYPR---VAAYRRC 55
>02_04_0037 + 19104367-19104978
Length = 203
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 214 VVVVRRCPHXWVGVMTQVTLCG 149
VVVV +C W GV+T + CG
Sbjct: 44 VVVVAKCRELWEGVLTAGSGCG 65
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 134 RREPGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKV 289
++ GP+ HHP+ P HDY+ L ++ + ++ + APK+
Sbjct: 5 KKSTGPSTRGSYHHPSIDSSVKPLHDYQQLL----ISAIGVNCIISQAAPKL 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,917
Number of Sequences: 37544
Number of extensions: 337967
Number of successful extensions: 1029
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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