Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31913
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              28   4.0  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)            28   5.3  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          27   6.9  
SB_9633| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   27   9.2  

>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 303 STLQSIYTRNRTLQTLSGSXLRLCQLTAITDGRTLS-RGKSFTRNAT 440
           ST +S  T  RT+ + S +  R+C++   T GR+   RGK   +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +3

Query: 231 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSXLRLCQLTAITDGRTLS 410
           N  W S  CS  LA        +N  + ++  RNR  +T +G+       +A      L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283

Query: 411 RGKSFTRNATMQQSTHILI 467
                 RN T +   HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +2

Query: 62  ILK*EVVSNWPYRTTPLVLPGAKVRRE---PGPTESYLRHHPNPXMRAPPNHDYRDTLMK 232
           I K E++ +  +   P     A    E   PG  ++  R  P P    P N +   +L  
Sbjct: 288 ITKQEILESQEFAQAPATPRSATTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQH 347

Query: 233 QKVAESV-LQRVVGEEAPKVLHKQFNSPINL 322
           +KV E++ ++R+  EE  K   K  N    L
Sbjct: 348 EKVVETLEIRRMAVEEKRKKRMKYENGETGL 378


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 261 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLS 353
           EWL  +H R C   S  Q+   T+NRT+ T S
Sbjct: 51  EWLVAKHERACHRASEFQAKTMTKNRTIWTPS 82


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 143 PGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 319
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 176 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 235

Query: 320 L 322
           L
Sbjct: 236 L 236


>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
          Length = 201

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 143 PGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 319
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 21  PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 80

Query: 320 L 322
           L
Sbjct: 81  L 81


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 451 DCC--IVAFLVKDLPLDNVRPSVMAVSWQRRSXLPDRV 344
           +CC  +  F + DLP+D+   S+    WQ+     DR+
Sbjct: 251 ECCWTLFCFCMDDLPVDDGSGSIDCCQWQKDDPDEDRI 288


>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 355 PDRVCNVLFRV*IDWRVELLVQHLRCLFANHSLQHR-----LCHLLFHK 224
           PD   N +  + +  R + L+ H+R  F N   + R     L HL+FHK
Sbjct: 71  PDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGLLIHLIFHK 119


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
 Frame = +2

Query: 104 TPLVLPGAKVRREPGPTESYLRHHPNPXMRAPPN--HDYRDTLMKQKVAESVLQRVVGEE 277
           TPL L      R P P    L H P P  +A  +  H +   L+    + S    V    
Sbjct: 420 TPLTLSTKPCFRTPHPLSQALLHIPRPFNQALLHVPHTFNQALLHSHPSPSQPSPVSHPP 479

Query: 278 APKVLHKQFNSP 313
           A  +LH    SP
Sbjct: 480 AQALLHTSHPSP 491


>SB_9633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 256 QHRLCHLLFHKGITVVVVRRCPHXWVGVMTQVTLCGARLPSD 131
           +HR C  + ++G+T +   R  H  +   T+V +   RLP+D
Sbjct: 7   RHRWCEYIMYRGLTRLGYARISHGGLS-DTEVQMARFRLPAD 47


>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 CCTSNSTLQSIYTRNRTLQTLS 353
           CC + +TL+ I T  R LQT+S
Sbjct: 390 CCGNRATLEKILTFGRYLQTMS 411


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 148 PHRELPASSPQPXNEGTS 201
           PH+  P   PQP NEG S
Sbjct: 268 PHQPAPGIPPQPMNEGNS 285


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 83  SNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 178
           S+ PY  T    L G +  REP P  S+  H P
Sbjct: 500 SHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 532



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 83  SNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 178
           S+ PY  T    L G +  REP P  S+  H P
Sbjct: 529 SHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 289 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPH 188
           H  C +   +LQ+R LCH L HK    V ++ C H
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSH 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,682
Number of Sequences: 59808
Number of extensions: 378515
Number of successful extensions: 1175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)