Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31913
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 29 2.5
At3g03950.2 68416.m00414 expressed protein contains Pfam profile... 29 2.5
At3g03950.1 68416.m00413 expressed protein contains Pfam profile... 29 2.5
At3g44200.1 68416.m04739 protein kinase family protein contains ... 28 3.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 28 3.2
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 28 3.2
At5g03890.1 68418.m00365 hypothetical protein 27 5.7
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 27 7.5
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 27 9.9
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 88 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPXNEGTS*P 207
+A P +S P P A PH++ P S PQP N + P
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42
>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 424
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 227 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIRQXT-SPLPT 379
MKQ V+ LQR GE P+ K I YSE ++ N I+ S PT
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIKYGAWSSTPT 268
>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 425
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 227 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIRQXT-SPLPT 379
MKQ V+ LQR GE P+ K I YSE ++ N I+ S PT
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIKYGAWSSTPT 269
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 278 APKVLHKQFNSPINLYSEQNIANSIRQXTSPLPTNGHYGRPHVVKRQVFY*KRHNA 445
AP LH + + +N +S+ S+ S L N + PH V V + RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 408 SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFR 509
S+ ++ ++A+M++ ++ D L LLSIYY++ R
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCR 2363
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 350
++ C +WL HL C + TL S I T N L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318
>At5g03890.1 68418.m00365 hypothetical protein
Length = 179
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 319 IDWRVELLVQHLRCLFANHSLQHRLCHLL 233
+++R + V H+ F+ HS+ H HLL
Sbjct: 22 LEYREPISVHHILTQFSGHSISHNNTHLL 50
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +2
Query: 170 HHPNPXMRAPPNHD--YRDTLMKQKVAESVLQRVV---GEEAPKVLHKQFNSPI 316
H+P P M+ PP HD Y M+Q E + + G E P +H P+
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPM 453
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 312 QSIYTRNRTLQTLSGSXLRLCQLTAITDGRTLSRGKSFTRNATMQQST 455
+S+Y +T + L+ + LR+ ++ TL KS+T+ ++ ST
Sbjct: 327 RSVYCLMKTHEPLNRAPLRVPLSGSLVSAETLGNPKSYTKAMNVKDST 374
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,547
Number of Sequences: 28952
Number of extensions: 245321
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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