Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31911
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0808 - 31883413-31883813,31883903-31884377                       29   1.7  
01_06_0252 + 27889652-27892450                                         29   2.2  
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    29   2.9  
07_01_0307 - 2194796-2199274                                           27   6.8  
02_05_0948 - 33003921-33006269                                         27   6.8  
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120...    27   8.9  

>02_05_0808 - 31883413-31883813,31883903-31884377
          Length = 291

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 363 VHCHGLHRPSLHRPSLHGPSLHCPSLHRP 449
           V  H LH   LHRP    PS H P  HRP
Sbjct: 33  VRPHQLHDALLHRPRRRRPSRHFPP-HRP 60



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 399 RPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRP 494
           R  L G  +    LH   LHRP  R PS H P
Sbjct: 25  RARLPGAGVRPHQLHDALLHRPRRRRPSRHFP 56


>01_06_0252 + 27889652-27892450
          Length = 932

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 372 HGLHRPSLHRPSLHGPSLHC 431
           H +  PSLH P LH   LHC
Sbjct: 280 HAVSFPSLHEPRLHVNQLHC 299


>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
            27799447-27799546,27799657-27800268,27800399-27800521,
            27800905-27801039,27801108-27801209,27801716-27801778,
            27801854-27802045,27802121-27802258,27802632-27802694,
            27803068-27803466
          Length = 1270

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 387  PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSI 500
            P   RPSL  P    P   RPSL  P   SP  HRP +
Sbjct: 1184 PRERRPSLLLPLPWSPRKRRPSLLLPPPWSPWKHRPGV 1221


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 369 CHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPG 512
           C+ +H   LH  +L   SL C SLH  ++    +R PSI   SI   G
Sbjct: 576 CYIIH-DLLHNLALKVASLECVSLHSSNVKSVEIR-PSIRHLSIITDG 621


>02_05_0948 - 33003921-33006269
          Length = 782

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 399 RPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGL 515
           R ++ G S   P +   S   PN R+P I +P +  PG+
Sbjct: 485 RGTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGV 523


>07_01_1163 -
           11011362-11011760,11011803-11011847,11011880-11012014,
           11012101-11012994
          Length = 490

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 396 HRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGL 515
           H P+   P+LH P L R +L+R  +   ++H     C  L
Sbjct: 165 HFPNGMAPALHFPRLARLTLYRVTISEDTLHGLLSRCSAL 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,242,077
Number of Sequences: 37544
Number of extensions: 85228
Number of successful extensions: 316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)