Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31911
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-2|CAA84296.1|  166|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical p...    29   2.6  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   2.6  
U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>Z34533-2|CAA84296.1|  166|Caenorhabditis elegans Hypothetical
           protein B0285.3 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 123 GGDRSTVG*RSVSKAGFARGKRHSGEGNKN 34
           GG+++  G R   + GF RG+   G GNKN
Sbjct: 84  GGNQNNYGNRGRGRGGFDRGRGGGGGGNKN 113


>Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 378 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCP 509
           +++ S+  P +  P L CPS+  P L    + SP +  P I+ P
Sbjct: 599 INKLSVLGPLVISPQLFCPSVLSPLLMSLPVISPQVGNPLIFSP 642


>Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 378 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCP 509
           +++ S+  P +  P L CPS+  P L    + SP +  P I+ P
Sbjct: 599 INKLSVLGPLVISPQLFCPSVLSPLLMSLPVISPQVGNPLIFSP 642


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 384  RPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPS 497
            +PS   PS +GPS + PS + PS + P+   P+ + PS
Sbjct: 1001 KPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPS 1038


>U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical
           protein B0310.4 protein.
          Length = 112

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 381 HRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHR 491
           HR   HR   H    H    HR   HR   R    HR
Sbjct: 51  HRGETHRGETHRGKTHRGETHRGETHRGETRRGETHR 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,975,247
Number of Sequences: 27780
Number of extensions: 60025
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)