Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31910
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   160   1e-40
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    29   0.55 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   3.8  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   5.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   6.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.9  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  160 bits (389), Expect = 1e-40
 Identities = 70/105 (66%), Positives = 83/105 (79%)
 Frame = +2

Query: 98  YLQXNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGI 277
           Y   + + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGI
Sbjct: 3   YAPGDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGI 62

Query: 278 TWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 412
           TW+++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 63  TWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 348 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 482
           +L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 273 PLALLASEYENPAAWPVFRPKNP 205
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 396 ISNLLPSNFKVIENSIRSIFHNISGIYFL 482
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 198 FGPTLCLPPASTVWHWAHRCTKIFFP 121
           +GP L + PAST+ +W    T+ F P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITR-FVP 915


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 209 FFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLEN 316
           FFG +TG A  F+Y  + +AK   +N   +   LEN
Sbjct: 56  FFGSQTGTAEDFAYRFSTEAKA-NFNLTNMVFDLEN 90


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 302 EYLENPKKYIPGTKMVFAGLKKANERADL 388
           EY+EN   ++ GT+M    L   NE   L
Sbjct: 489 EYIENSGNFVVGTEMSIYNLPGENEEDKL 517


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +3

Query: 321  RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 473
            R   L+ RW  +D++    +  ++   ++L     + +NS+   FH++  +
Sbjct: 2544 RTFKLDVRWIQIDNQLYGGIYPIILYPSILSQEDTMNDNSLLPTFHSMVAV 2594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,997
Number of Sequences: 5004
Number of extensions: 49709
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)