Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31910
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22840.1 68414.m02852 cytochrome c, putative similar to cytoc...   151   2e-37
At4g10040.1 68417.m01641 cytochrome c, putative similar to cytoc...   146   8e-36
At5g08520.1 68418.m01011 myb family transcription factor contain...    30   0.80 
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl...    30   1.1  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    29   1.9  
At4g08040.1 68417.m01294 1-aminocyclopropane-1-carboxylate synth...    28   3.2  
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    28   3.2  
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila...    28   4.3  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At2g38090.1 68415.m04676 myb family transcription factor contain...    27   5.7  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    27   5.7  
At5g06850.1 68418.m00774 C2 domain-containing protein contains I...    27   7.5  
At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to ...    27   7.5  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At1g22840.1 68414.m02852 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 114

 Score =  151 bits (367), Expect = 2e-37
 Identities = 67/101 (66%), Positives = 80/101 (79%)
 Frame = +2

Query: 110 NAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWND 289
           NA+ G+KIF  +CAQCHTVEAG  HK GPNL+G FGR++G  AG+SYS ANK K + W +
Sbjct: 11  NAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEE 70

Query: 290 DTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 412
             L++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK +T
Sbjct: 71  KALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111


>At4g10040.1 68417.m01641 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 112

 Score =  146 bits (354), Expect = 8e-36
 Identities = 64/101 (63%), Positives = 77/101 (76%)
 Frame = +2

Query: 110 NAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWND 289
           N + G+KIF  +CAQCHTVE G  HK GPNL+G FGR++G   G+SYS ANK+  + W +
Sbjct: 11  NPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEE 70

Query: 290 DTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 412
            TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK  T
Sbjct: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGT 111


>At5g08520.1 68418.m01011 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +2

Query: 158 HTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPG 337
           H  + G   K G N H          AG S SD  + KGI W +D    +L    KY  G
Sbjct: 83  HAGDEGASSKKGGNSHA----GESNQAGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKG 138


>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
           glycine-rich protein 17 (GRP17) PMID:11431566; function:
           pollen recognition (PMID:10655594)
          Length = 543

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 170 AGGKHKVGPNLHGFFGRKTGQAAGFSYS 253
           +G KHK+G   HG  G K G+  G S S
Sbjct: 415 SGSKHKIGGGKHGGLGGKFGKKRGMSGS 442



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 173 GGKHKVGPNLHGFFGRKTGQAAG 241
           GGKHK+G   H F G K G   G
Sbjct: 517 GGKHKIGGGKHKFGGGKHGGGGG 539



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +2

Query: 170 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPGTKMV 349
           +G KHK+G   HG    K G+  G S S+   +       ++        K  I G K  
Sbjct: 469 SGSKHKIGGGKHGGLRGKFGKKRGMSGSEGGMSGSEGGMSESGMSGSGGGKHKIGGGKHK 528

Query: 350 FAGLK 364
           F G K
Sbjct: 529 FGGGK 533


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 390 LPISNLLPSNFKVIENSIRSIFH-NISGIYFLFSPISMISYVF 515
           LPI + + + F VI N +RS FH    G+  L+  +S+I  ++
Sbjct: 73  LPILSFVFAVFTVIANGVRSFFHLRAKGMAILWLSMSLIYLIY 115


>At4g08040.1 68417.m01294 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthase from Malus sylvestris [SP|P37821], Solanum
           tuberosum [GI:520914]
          Length = 460

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 372 FAFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLAS 253
           F   +P +  L+P  Y+ GF R  K  +   ++P+  ++S
Sbjct: 127 FCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSS 166


>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 306 ILRIPRNTSLEPRWYLLDSR-RQMSVLTLLPISNLLPSNF 422
           I +I R   +E R Y LD   R +   T LP+S+ LP N+
Sbjct: 809 IAKICRELDIEYRLYPLDINVRNLPTSTALPVSDRLPPNW 848


>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 626

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 219 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSLEPRWYLLDSRRQMS 377
           ++   + D+H  M ++L  ++      LN+   P    + PR  LL   R +S
Sbjct: 134 QEFGDIDDNHVAMVMRLSIVYSHPDQQLNVTLFPAEIPVPPRKPLLSLNRDLS 186


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 203 VDSVLLCVCHQLQQCGTG---HIVVQKFSFHFQRXPAGTPILNFYN*CNS 63
           V SV+L  C  L++   G   H  V K     +    GTP+++FY  C+S
Sbjct: 287 VFSVVLKACASLEELNLGKQIHACVAKLGLESE-VSVGTPLVDFYIKCSS 335


>At2g38090.1 68415.m04676 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +2

Query: 173 GGKHKVGPNLHGFF----GRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPG 337
           G     G N++G++    G K G AA    ++  + KG+ W ++   ++L   KKY  G
Sbjct: 105 GASGNNGFNMNGYYFSAAGGKRGSAA--RTAEHERKKGVPWTEEEHRQFLMGLKKYGKG 161


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 309 LRIPRNTSLEPRWYLLDSRRQM 374
           LR+P ++ L P+WY L+ ++ M
Sbjct: 385 LRVPPDSPLAPQWYRLEDKKGM 406


>At5g06850.1 68418.m00774 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 669

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 312 RIPRNTSLEPRWYLLDSRR 368
           R+P ++ L P+WY L+ RR
Sbjct: 21  RVPPDSPLAPQWYRLEDRR 39


>At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to
           syntaxin-related protein Nt-syr1 GI:4206787 from
           [Nicotiana tabacum]
          Length = 303

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 TWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLI 391
           T N D  FE +EN K  + G + ++  L+ +NE    +
Sbjct: 30  TMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTV 67


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 210 SLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSLE 338
           S  + L  L   H+P P  + A H +++   N++R   + SLE
Sbjct: 40  SFTKLLPSLPQQHSPSPASVSATHSLSSHFSNVVRWIPDGSLE 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,564
Number of Sequences: 28952
Number of extensions: 254680
Number of successful extensions: 698
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)