Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31908
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   5.0  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   5.0  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   5.0  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   6.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   6.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.7  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 157 VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKN 300
           + Q+  GL++   +G++H+         D +G+I   +FGI   L  N
Sbjct: 503 IKQTLKGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELN 550


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -1

Query: 409 EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 236
           ++ +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 265 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLG 170
           G  S  +HHH++ +  H  +  L G   EV G
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG 309


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 98  KQKKILSLFYNVNEINYE 151
           K+  + SLF NV++IN+E
Sbjct: 60  KKSNVFSLFSNVDDINFE 77


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +2

Query: 86  AFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLP 265
           AF++++++I  +   + E+N+  E  +V +  N E     YTN+       +  +   L 
Sbjct: 259 AFIQREERIERIKAEITELNHSLELLRVEKQQNDED----YTNIMK-SKVALELQSSQLS 313

Query: 266 KNLEFS 283
           + +EFS
Sbjct: 314 RQIEFS 319


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 110 ILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKNL 274
           I S ++++    +E E+Y +AQD   +   D       +   +  +   F+PK L
Sbjct: 702 IASAYFSLKNEKFENEFYLLAQDLRRKIMSDVIIKTSKH---LEEFSEKFIPKKL 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,274
Number of Sequences: 5004
Number of extensions: 38952
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)