Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31908
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   3.2  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   3.2  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    28   4.2  
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s...    27   9.7  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   9.7  
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    27   9.7  
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains...    27   9.7  
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    27   9.7  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 185 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 328
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 370 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 254
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 47  STVPEFKTTPVDAAFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDC--YTNMK 220
           STVP F ++  DA     +   +SL     +  ++   Y   QD   E         +  
Sbjct: 652 STVPRFASSSGDA-----EASPMSL----TDSGFQNSLYSCMQDTTHELLHGAGQINSSN 702

Query: 221 AYENFMMMYKVGFLPKNLEFSIF--YEKMREEAIALFKL 331
             +NF+ +YK G + ++L+ S F  Y ++REE   +F +
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAI 741


>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
           similarity to SKP1 interacting partner 1 GI:10716947
           from [Arabidopsis thaliana]
          Length = 301

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 400 GNVLIRLLHSYYPALRHRQLR-STCSIRSLSSI 495
           GN+  R++  Y   L+H ++R ST + R L S+
Sbjct: 210 GNIEARIIGKYMTQLKHLEIRYSTLTARGLDSV 242


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 391 VDSGVACCFVETFKIF 344
           +DSG+ CC + TF  F
Sbjct: 187 LDSGILCCLIHTFNAF 202


>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 104 KKILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKNLEFS 283
           +K+LS FY + E N+  +   + +  ++  S   Y   KA+E F      G +P    ++
Sbjct: 136 EKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYL-QKAFELFKSSRLHGVMPNTRSYN 194

Query: 284 IFYEK--MREEAIALFKLF 334
           +  +   + ++    ++LF
Sbjct: 195 LLMQAFCLNDDLSIAYQLF 213


>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 640

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 206 YTNMKAYENFMMMYKVGFLPKNLEFSIFYEKMREE 310
           Y ++   EN + + K+   P+NLE    +EK+ +E
Sbjct: 517 YVDLPDAENRLKILKIFLTPENLESDFQFEKLAKE 551


>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 187 RGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEG 306
           + +  L H  +   K+ DD++ RIP QE   ++ L +  G
Sbjct: 314 KNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQRVG 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,197,799
Number of Sequences: 28952
Number of extensions: 197478
Number of successful extensions: 605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)