Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31907
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   10.0 

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 227 PRETTKKSVDKSRRHNINRPTRLSRCES 310
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 124 SLRKTDKSTPKSQRCSVM 177
           S +K   +TPK  +CS++
Sbjct: 270 SKKKLSPATPKGSKCSMI 287


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 407 IHYCLIDADRFWEFSIRL*IPS 342
           ++ C+I  DR+W  +     PS
Sbjct: 135 LNLCVISLDRYWAITDPFTYPS 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,349
Number of Sequences: 438
Number of extensions: 2200
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)