Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31907
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35680.2 68418.m04264 eukaryotic translation initiation facto...   163   6e-41
At5g35680.1 68418.m04263 eukaryotic translation initiation facto...   163   6e-41
At2g04520.1 68415.m00458 eukaryotic translation initiation facto...   162   1e-40
At2g40780.1 68415.m05031 hypothetical protein                          35   0.028
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    31   0.61 
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    29   1.4  
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   4.3  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    28   4.3  
At5g40360.1 68418.m04896 myb family transcription factor (MYB115...    27   5.7  
At5g35180.1 68418.m04169 expressed protein                             27   7.5  
At2g07690.1 68415.m00993 minichromosome maintenance family prote...    27   7.5  
At1g09810.1 68414.m01101 expressed protein contains Pfam profile...    27   9.9  

>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  163 bits (396), Expect = 6e-41
 Identities = 74/105 (70%), Positives = 85/105 (80%)
 Frame = +3

Query: 120 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 299
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 300 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 434
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  163 bits (396), Expect = 6e-41
 Identities = 74/105 (70%), Positives = 85/105 (80%)
 Frame = +3

Query: 120 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 299
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 300 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 434
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  162 bits (393), Expect = 1e-40
 Identities = 73/104 (70%), Positives = 84/104 (80%)
 Frame = +3

Query: 120 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 299
           L+FKEDGQEYAQV +MLGNGR EAMC DG KRLCHIRGK+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 300 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 431
           D KADVILKY  DEAR LK YGE PE  R+NE +V  ++  D++
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDN 129


>At2g40780.1 68415.m05031 hypothetical protein 
          Length = 171

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 132 EDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 281
           E+ Q  AQV  + G+ ++E M   G   L     K R+ +WI +G  ++I
Sbjct: 20  EECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMWIRRGSFVVI 69


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 153 QVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRD 293
           ++ K LGN ++  +  DG+ ++  +    ++K W   G  I+I  RD
Sbjct: 280 EIKKRLGNQKV-FLVLDGVDKVAQVHALAKEKNWFGPGSRIIITTRD 325


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 141 QEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 281
           ++++Q+ KML  GR+   C +      H+R  ++K  W  + DIILI
Sbjct: 210 KKWSQIAKML-QGRVGKQCRERWHN--HLRPDIKKDGWTEEEDIILI 253


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 288 RDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 431
           RDY+   AD ILK   D+    K Y    ++  +    V+ +    E+
Sbjct: 207 RDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGEN 254


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 128 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 39
           KD   F +F+F++S+ P FS F    R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591


>At5g40360.1 68418.m04896 myb family transcription factor (MYB115)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 359

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +3

Query: 120 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 299
           +V  +  + +  + KM   GR+   C +      H+R  ++K  W  + D ILI +    
Sbjct: 172 MVKSKGTKNWTSIAKMF-QGRVGKQCRERWHN--HLRPNIKKNDWSEEEDQILIEVHKIV 228

Query: 300 DAKADVILKYTPDEARNL 353
             K   I K  P  + N+
Sbjct: 229 GNKWTEIAKRLPGRSENI 246


>At5g35180.1 68418.m04169 expressed protein
          Length = 778

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  KMKLKNVSWSLRKTDKSTPKSQRCS 171
           K+KLKNVSW++       PK+   S
Sbjct: 506 KVKLKNVSWAIASLSLKRPKAPGAS 530


>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 249 VWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVR-INETVVYSVDGLD 425
           V I Q  I ++GL D  +A +     +TPDE    K + +  +  + I   +  S+ G  
Sbjct: 282 VAIRQPYIRVVGLEDTNEASSRGPANFTPDEEEEFKKFADSQDVYKNICTKIAPSIFG-H 340

Query: 426 EDIE 437
           ED++
Sbjct: 341 EDVK 344


>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 428

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 291 DYQDAKADVILKYTPDEARNLKTYGEFPETVRINE 395
           DY+DAK  VI  Y+ D+      Y  +  T+  N+
Sbjct: 185 DYEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNK 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,147,528
Number of Sequences: 28952
Number of extensions: 167833
Number of successful extensions: 519
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)