Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31906
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit...    36   0.41 
UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella ve...    35   0.96 
UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n...    35   1.3  
UniRef50_Q6TVH8 Cluster: ORF010 EEV maturation protein; n=5; Par...    34   2.2  
UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finge...    32   6.8  
UniRef50_A7RN82 Cluster: Predicted protein; n=1; Nematostella ve...    32   8.9  
UniRef50_P35721 Cluster: Succinate dehydrogenase cytochrome b560...    32   8.9  

>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
           RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase
           III subunit RPC1 - Plasmodium falciparum
          Length = 2339

 Score = 36.3 bits (80), Expect = 0.41
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 491 NMTLQRCLSHFLMLQFNWNAQHVNYVTFYLHVVY-IAVYCFSL 366
           N  L  C  HF  ++ N+   H+ Y  + +H++Y I  YC SL
Sbjct: 92  NKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSL 134


>UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 150

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -1

Query: 417 CHILFAC---CVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRD 247
           C++LF C   C+ CC + FI    +  I+CC  + LF C   YK  +    +L + +   
Sbjct: 70  CYMLFICYKCCIECCYMLFIC--YKCCIECC--YMLFFC---YKCCIECCYMLFICYKCC 122

Query: 246 IVCIFLIFFWF 214
           I C +++F  +
Sbjct: 123 IECCYMLFICY 133



 Score = 34.7 bits (76), Expect = 1.3
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -1

Query: 417 CHILF---ACCVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRD 247
           C++LF    CC+ CC + FI    +  I+CC  + LF C   YK  +    +L   +   
Sbjct: 14  CYLLFFCYKCCIECCYMLFIC--YKCCIECC--YMLFFC---YKCCIECCYMLFFCYKCC 66

Query: 246 IVCIFLIFFWF 214
           I C +++F  +
Sbjct: 67  IECCYMLFICY 77



 Score = 34.3 bits (75), Expect = 1.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 405 FACCVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRDIVCIFLI 226
           + CC+ CC L F     +  I+CC  + LF C   YK  +    +L   +   I C +++
Sbjct: 7   YKCCIECCYLLFFC--YKCCIECC--YMLFIC---YKCCIECCYMLFFCYKCCIECCYML 59

Query: 225 FFWF 214
           FF +
Sbjct: 60  FFCY 63


>UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC2038 UniRef100 entry -
           Rattus norvegicus
          Length = 184

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -1

Query: 435 CPA--RKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKL----FKCSGLYKTN 289
           CP+  R LC     CC HCC  +     +  + +CCQP +       C+G Y  N
Sbjct: 55  CPSSCRGLC-CAKGCCCHCCCCYCCCAPVACSSECCQPVQCQCIQVSCAGSYCVN 108


>UniRef50_Q6TVH8 Cluster: ORF010 EEV maturation protein; n=5;
           Parapoxvirus|Rep: ORF010 EEV maturation protein - Bovine
           papular stomatitis virus
          Length = 643

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 43  PHRHLLHPGAAAGQPVAPLLGDVLRCFSSTHSSPY-DLMRCR-QDKPTRRRSYEDGGLNE 216
           PHR  L P AA+ Q  A +  D   C+    SSP+ D++R R +D+P    ++E+   N 
Sbjct: 72  PHRDALDPPAASTQRFAIVSRDDPACYIPESSSPFLDILRRRSEDEPELLAAFEE---NP 128

Query: 217 PKKNQKNTNNISK 255
           P    ++ + +++
Sbjct: 129 PPAGARSIDELNQ 141


>UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 83

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 470 LSHFLMLQFNWNAQHVNYVTFYLHV-VYIAVYCF 372
           L  F ++  N    H++Y+TFYLH+ +YI +Y +
Sbjct: 42  LIFFFVVLCNIYCFHISYITFYLHIYIYIYIYIY 75


>UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finger
           protein 31,; n=1; Danio rerio|Rep: PREDICTED: similar to
           ring finger protein 31, - Danio rerio
          Length = 848

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 405 FACCVHCCL-LFFIADRLRTNIQCCQPFKLFKC 310
           F  C HCC  L   ADRLR +   C     FKC
Sbjct: 532 FRWCAHCCFGLLHEADRLRMDCPSCGKSTCFKC 564


>UniRef50_A7RN82 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 125

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 109 VLRCFSSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNN 246
           VL CF+    S Y + +C Q+KPT     +D    E +++  N N+
Sbjct: 70  VLACFAEYFPSKYRVTKCSQEKPTNNEENKD---EEQERDAGNNNS 112


>UniRef50_P35721 Cluster: Succinate dehydrogenase cytochrome b560
           subunit; n=4; Streptophytina|Rep: Succinate
           dehydrogenase cytochrome b560 subunit - Marchantia
           polymorpha (Liverwort)
          Length = 137

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 458 LMLQFNWNAQHVNYVTFYLHVVYIAVYCFSLPIVCVRISNAVNH 327
           L L F    Q+  ++TFYL+   I++  F+L  +C  +SN V H
Sbjct: 49  LSLTFYHFYQYFFFLTFYLNWFIISLVNFTLLALCYHMSNGVRH 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,963,004
Number of Sequences: 1657284
Number of extensions: 8543491
Number of successful extensions: 23735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23702
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)