Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31906
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.2  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   5.1  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.7  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = +3

Query: 327 MVDSIGYSYADDRQ*KTINSNV-------HNMQIKCDIVYVLGIPIEL 449
           +++ I  SY D+   K +N  V       HN++IK + +  LGIPIE+
Sbjct: 9   LLNKILGSYVDNLDTKQLNIGVWGGHVSLHNLRIKPEALDKLGIPIEI 56


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 458 LMLQFNWNAQHVNYVTFYLHVVYIAVYCFSLPIV 357
           ++L    N    NYV F++ V+     CF +P+V
Sbjct: 279 IILNSRKNLSLQNYVGFFVSVLDALFECFDVPVV 312


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 344 IFVRRRSAMKNNKQQCTQHANKM*HSLRAG 433
           IFV       NN+ Q ++H N   HS+R G
Sbjct: 27  IFVSWSLKKFNNENQTSEHFNTASHSVRTG 56


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 49  RHLLHPGAAAGQPVAP-LLGDVLRCFSSTHSSPYDLMRCRQDKPTRRRSY-EDGGLNEPK 222
           RHL+H     GQP A  LLGD++  F    +  ++    R  K T  +++ + G  + P 
Sbjct: 87  RHLVHMNQFWGQPDAMILLGDLV-SFQHLDNEEFNKRAKRLKKITGAKNFWQVGNSSLPA 145

Query: 223 KNQKNTN 243
           +  +N N
Sbjct: 146 RTFENGN 152


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 381 LLFFIADRLRTNIQCCQPFKLFK 313
           L++F+ D +R  IQ    F LFK
Sbjct: 146 LMYFVQDSMRPEIQDALGFNLFK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,912
Number of Sequences: 5004
Number of extensions: 37850
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)