Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31906
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0746 + 5714443-5714580,5715175-5715261,5715400-5715657,571... 33 0.10
11_06_0149 - 20636801-20637044,20637859-20639180 31 0.73
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 30 0.96
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562... 29 1.7
01_06_0861 - 32528419-32529102 28 3.9
05_05_0200 - 23171803-23171906,23172304-23173951 28 5.1
03_06_0380 + 33518309-33518464,33518978-33519064,33519155-335194... 28 5.1
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 28 5.1
02_03_0240 - 16739628-16740369,16740392-16740978 27 8.9
>07_01_0746 +
5714443-5714580,5715175-5715261,5715400-5715657,
5715765-5715929,5716106-5716159,5716318-5716464,
5716735-5717112
Length = 408
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 46 HRHLLHPGAAAGQPVAPLLGDVLRCFSSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKK 225
HRHL A + + GD++ C +H +D + R +Y GL + K
Sbjct: 31 HRHLKRLNKPAVKSIESPDGDIIDCVHLSHQPAFDHPLLKNHTLQMRPAYHPEGLYDDDK 90
Query: 226 NQKNTNNISKKP 261
++N +KP
Sbjct: 91 RSVASDNAGEKP 102
>11_06_0149 - 20636801-20637044,20637859-20639180
Length = 521
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 163 RQDKPTRRRSYEDGGLNEPKKNQKNTNNIS 252
R KP+RRR GG PKK K+ N ++
Sbjct: 14 RNPKPSRRRGRGRGGSKRPKKTTKSKNRLA 43
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 1 APANATMPNHEXHQPHRHLLHPGAAAGQPVAPLL 102
APA A P H H+ AAAGQP A L
Sbjct: 224 APAGAAWPRHRDRTQALHVFGAAAAAGQPSASSL 257
>07_03_1706 +
28855669-28855801,28856013-28856044,28856158-28856229,
28856631-28856727,28857195-28857256,28857726-28858024,
28858306-28858663,28858692-28859297,28859500-28859698,
28860039-28860101,28860603-28860673
Length = 663
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 166 QDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 261
QD P + GGL + K+ ++T+ IS KP
Sbjct: 79 QDAPKKTPKVNSGGLQKHKQTDRHTSRISTKP 110
>01_06_0861 - 32528419-32529102
Length = 227
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 67 GAAAGQPVAPLLGDVLRCFSSTHSSPYDLMRCRQDKPTR 183
GAAAG V LL + FSSTH++ +L+R P R
Sbjct: 110 GAAAGA-VVELLAPLPASFSSTHAAAAELLRVDGSFPRR 147
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -2
Query: 446 FNWNAQHVNYVTFYLHVVYIAVYC----FSLPIVCVRISN 339
F WN Q + + Y+H+ ++C F + V I+N
Sbjct: 350 FGWNMQRLGFGNMYVHIATFMLFCLAPFFIFNLAAVNINN 389
>03_06_0380 +
33518309-33518464,33518978-33519064,33519155-33519400,
33519559-33519723,33519920-33519973,33520079-33520225,
33520916-33521293
Length = 410
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +1
Query: 46 HRHLLHPGAAAGQPVAPLLGDVLRCFSSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKK 225
HRHL A + + GD++ C +H +D + R +Y GL + K
Sbjct: 37 HRHLKRLNKPAVKSIESPDGDIIDCVHISHQPAFDHPFLKNHTIQMRPNYHPDGLYDESK 96
Query: 226 N 228
+
Sbjct: 97 S 97
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 432 PARKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKLFKCS 307
PA L +L CC CC + + ++L I CC K KCS
Sbjct: 5 PAHALL-VLLLCC-SCCSVRHLLEQLARRIPCCWDAK--KCS 42
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 122 KHLRTSPSRGATGWPAAA 69
K R+SP RG GWP++A
Sbjct: 196 KWCRSSPPRGEPGWPSSA 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,306,252
Number of Sequences: 37544
Number of extensions: 231852
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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