Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31906
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core alpha1,3...    29   2.0  
Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical
           protein K08F8.3 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 124 SSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 261
           S+ H     +++  + KP +R S+E+   N PKK   N N + K+P
Sbjct: 48  SNDHELDVPILQKEELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


>AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core
           alpha1,3-fucosyltransferase protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 124 SSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 261
           S+ H     +++  + KP +R S+E+   N PKK   N N + K+P
Sbjct: 48  SNDHELDVPILQKEELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


>Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical
           protein C09G1.3 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 356 RRSAMKNNKQQCTQHANKM*HSLRAGHSN*TEALGNVKDISVMSCFIIKW 505
           RR+   N +Q+  +H +     +   +    E+L  V D   MSC +I W
Sbjct: 8   RRTKRNNEEQKTEEHQDVQETRILTYNQKNAESLQQVSDEVFMSCKVIDW 57


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 226 FFLVRLIRHPRMISFELAYLVCI 158
           F L  LIR  R++ F LAY VC+
Sbjct: 713 FHLFSLIRDQRVVDFLLAYAVCL 735


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 247 YCLYFFDFFLVRL 209
           +CL+FFDF +VRL
Sbjct: 81  FCLFFFDFLMVRL 93


>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -3

Query: 226 FFLVRLIRHPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQ 65
           FFL + +   R  S  + +LVC +   +  +      + HP+  EP    + H+
Sbjct: 517 FFLFKSLLRSRK-SKRICFLVCCSSGDQVGSAENVDMNGHPKTNEPSEKHEDHE 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,448
Number of Sequences: 27780
Number of extensions: 213950
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)