Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31906
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28190.1 68418.m03413 hypothetical protein                          28   3.2  
At5g05350.1 68418.m00576 expressed protein contains Pfam profile...    27   5.7  
At3g10980.1 68416.m01325 expressed protein                             27   5.7  
At5g24920.1 68418.m02951 expressed protein ; expression supporte...    27   9.9  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.9  
At1g05410.1 68414.m00549 expressed protein                             27   9.9  

>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -1

Query: 510 NVHFIMKHDITEMSFTFPNASVQLECPARKLCHILFAC----CVHCCLLFFIADRLRTNI 343
           +V F++ H +  M   FP  S+  E  A  +C    AC     + C  L F+     TN+
Sbjct: 542 HVIFVLLHHVFWMVLVFPTTSISRESRASFICWSEVACESRKLLTCGKLSFVVACFSTNV 601

Query: 342 Q 340
           +
Sbjct: 602 R 602


>At5g05350.1 68418.m00576 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614; expression
           supported by MPSS
          Length = 526

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -2

Query: 446 FNWNAQHVNYVTFYLHVVYIAVYCFS 369
           F WN + + +   Y+H+    ++C +
Sbjct: 332 FGWNMERIGFGNMYVHIATFVLFCLA 357


>At3g10980.1 68416.m01325 expressed protein 
          Length = 557

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 446 FNWNAQHVNYVTFYLHVVYIAVYCFS 369
           F WN + V +   Y+H+    ++C +
Sbjct: 355 FGWNMERVGFGNMYVHIATFILFCLA 380


>At5g24920.1 68418.m02951 expressed protein ; expression supported
           by MPSS
          Length = 147

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 202 HPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQ 71
           +P  ++  +A  +C+      K E     S+H ++EE   GQ Q
Sbjct: 77  NPTFLATPVAAKICLDCVNMEKKEGQNGESKHSKLEEHIFGQDQ 120


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 426 RKLCHILFACCVHCCLL-FFIADRLRTNIQCCQPFKLFKC 310
           R L H + A      L  FF+ D L + IQ  + F+LF C
Sbjct: 527 RSLFHCICAPLYEVTLPDFFLGDHLTSQIQAIRSFELFIC 566


>At1g05410.1 68414.m00549 expressed protein
          Length = 471

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 465 TFPNASVQLECPARKLCHILFACCVHCCLLFFIADRLRTNIQC 337
           T P     + C  RK C  +  CC+ CC L  +     + I+C
Sbjct: 168 TLPAMPCDICCGERKFC--VDCCCILCCKLISLEHGGYSYIKC 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,381
Number of Sequences: 28952
Number of extensions: 186940
Number of successful extensions: 453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)