Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31905
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23330.1 68414.m02917 expressed protein 30 1.1
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 28 4.3
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 27 5.7
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 27 5.7
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 27 7.5
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 27 7.5
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 27 9.9
At2g45510.1 68415.m05660 cytochrome P450, putative 27 9.9
At2g11090.1 68415.m01187 expressed protein 27 9.9
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 27 9.9
>At1g23330.1 68414.m02917 expressed protein
Length = 471
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 157 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 2
A GT+R + + DGKS++P C+ IPWL +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 173 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 310
GSG+ +P S V T A + S+PS S AP Q L+K+ +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 229 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 327
RRP + VDD R E + E+E + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 229 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 327
RRP + VDD R E + E+E + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 37 YESDFYTTRRPYRSTYSVTAELIYR 111
Y FYT R+P ST + A+ +Y+
Sbjct: 451 YIESFYTLRKPVASTINTLADALYK 475
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 161 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 262
+TW + + H W S SW T W SL +M
Sbjct: 209 VTWLVNSACHIWGSRSWNTKDTSRNVWWLSLFTM 242
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1)
identical to peroxisomal ABC transporter PXA1
GI:15320529 from [Arabidopsis thaliana]; contains Pfam
profile PF00005: ABC transporter;
Length = 1337
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 49 FYTTRRPYRSTYSVTAELIYRPTSRSVTRLVT 144
FY +RPY + ++ +LIY TS + L+T
Sbjct: 519 FYVPQRPYMAVGTLRDQLIYPLTSGQESELLT 550
>At2g45510.1 68415.m05660 cytochrome P450, putative
Length = 511
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 516 VIEGKIVDAIRDAA*GHQKLSNVSVIAETVRD 421
+++ KIV IRD H+K ++V+ E++ +
Sbjct: 326 LVQEKIVQEIRDVTFSHEKTTDVNGFVESINE 357
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 191 PWSSVSWTESLTDAAQHWPSLPSMTS 268
PWSS +WT + + + W S+ + T+
Sbjct: 38 PWSSTTWTTTRSHYSTPWSSIITSTT 63
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 161 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 262
+TW + + H W S SW T W SL +M
Sbjct: 208 VTWLVNSACHIWGSRSWKTKDTSRNVWWLSLFTM 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,831,863
Number of Sequences: 28952
Number of extensions: 218283
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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