Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31904
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 79   FYINLISFLFLLYTRDRCGSQRQM 8
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 79   FYINLISFLFLLYTRDRCGSQRQM 8
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 79   FYINLISFLFLLYTRDRCGSQRQM 8
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 79   FYINLISFLFLLYTRDRCGSQRQM 8
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 184 AQHHTAPGSRGRAA*KHLRWTMPGPDSSYSSFEIHICWKVDREARMDP 327
           AQ H++    G      +R   P  ++      + +  K DREA + P
Sbjct: 189 AQSHSSVERAGLLGGVKMRGLQPDDNNRLRGETLEVAIKEDREAGLIP 236


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 360 SPREEVLRMDRWIHPGFPV 304
           +P  + + +  WIHP  P+
Sbjct: 533 NPLTDTIPIHVWIHPWIPL 551


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,741
Number of Sequences: 336
Number of extensions: 1635
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)