Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31904
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 128 4e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 60 1e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 6e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 37 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 32 0.032
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.69
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.2
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 3.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 4.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 4.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 4.8
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 24 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 128 bits (309), Expect = 4e-31
Identities = 57/65 (87%), Positives = 63/65 (96%)
Frame = -3
Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
DRM KEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV
Sbjct: 311 DRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 370
Query: 242 HRKCF 228
+RKCF
Sbjct: 371 YRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 60.1 bits (139), Expect = 1e-10
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = -3
Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
+R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++
Sbjct: 316 ERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVI 374
Query: 242 HRKCF 228
R+ F
Sbjct: 375 FRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.3 bits (137), Expect = 2e-10
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = -3
Query: 419 RMXKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP- 252
R+ E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G
Sbjct: 365 RLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSD 423
Query: 251 --GIVHRKC 231
++ ++C
Sbjct: 424 RLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.2 bits (117), Expect = 6e-08
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -3
Query: 341 SVWIGGSILASLSTFQQMWISKEEYDESG 255
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 4e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 377 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 255
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 36.7 bits (81), Expect = 0.001
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 380 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 237
+ + +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 372 VDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 32.3 bits (70), Expect = 0.032
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 419 RMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 252
R+ +E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 653 RIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.69
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 335 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 234
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 410 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 300
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 172 ELGRAQHHTAPGSRGRAA*KHLRWT 246
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 384 DHQDQDHRSPREEVLRMDRWIHPG 313
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 374 IKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 234
I +I PP + ++ W G I + ++WI ++ G ++ K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 4.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 181 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 14
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 160 RLRSELGRAQH-HTAPGSRGRAA*KHL 237
R R + GR + HTAP RGR H+
Sbjct: 95 RGRGQRGRGNYGHTAPNRRGRGRGGHM 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,533
Number of Sequences: 5004
Number of extensions: 25310
Number of successful extensions: 56
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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