Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31904
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              131   2e-31
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   6e-31
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         130   6e-31
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   8e-31
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              129   8e-31
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      129   8e-31
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                116   1e-26
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 48   2e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  38   0.003
SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   6.4  
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)                        27   8.5  
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)          27   8.5  
SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)                   27   8.5  
SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)                27   8.5  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  131 bits (317), Expect = 2e-31
 Identities = 60/65 (92%), Positives = 63/65 (96%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 285 DRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIV 344

Query: 242 HRKCF 228
           HRKCF
Sbjct: 345 HRKCF 349


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  130 bits (313), Expect = 6e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 312 DRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  130 bits (313), Expect = 6e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 311 DRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 370

Query: 242 HRKCF 228
           HRKCF
Sbjct: 371 HRKCF 375


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  129 bits (312), Expect = 8e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 274 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIV 333

Query: 242 HRKCF 228
           HRKCF
Sbjct: 334 HRKCF 338


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  129 bits (312), Expect = 8e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 311 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 370

Query: 242 HRKCF 228
           HRKCF
Sbjct: 371 HRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  129 bits (312), Expect = 8e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 312 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  116 bits (278), Expect = 1e-26
 Identities = 52/65 (80%), Positives = 58/65 (89%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEI  LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+KEEY E GP IV
Sbjct: 85  DRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIV 144

Query: 242 HRKCF 228
           HRKCF
Sbjct: 145 HRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -3

Query: 395 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 228
           + P  I+ ++I+   ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -3

Query: 377 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 255
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 306
           +R+ +E+ +  P ++++K+I+     E++++ WIGGSILASL
Sbjct: 189 ERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +3

Query: 126 QFSGITRYNVLTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAGAGLVVFLLRDPHLLEGG 305
           Q++ +T  N++      RTST       T+        + D  A    +LL    L E  
Sbjct: 25  QYAALTSCNLIGQINNIRTSTQRTRRIETKELLCRTKIIGDKAAA---YLLIKKALKETR 81

Query: 306 QGSQDGSTDPYG 341
            G +DG  D YG
Sbjct: 82  NGYEDGDVDDYG 93


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 132 SGITRYNVLTVAFRTRTSTTPHSTGVT 212
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
          Length = 333

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 141 TRYNVLTVAFRTRTSTTPHSTGVT 212
           +RYN+ T +FR  T+TT  ST VT
Sbjct: 270 SRYNIETASFRHATTTT-QSTSVT 292


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 374 IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 261
           +K+  PP     + W+GG+I  SL        ++E Y +
Sbjct: 119 VKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 393 RALDHQDQDHRSPREEVLRMDRWI 322
           + LDH+ + H   ++E+ R+ +WI
Sbjct: 62  KELDHKSELHSKQKKEIKRLKKWI 85


>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 229 KHLRWTMPGPDSSYSSFE-IHICWKVDREARMDP 327
           K++RW    PD + SSF+ + +   V+R+  +DP
Sbjct: 176 KYVRWPPLYPDWNQSSFDLVEVLSAVNRDLNIDP 209


>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
          Length = 230

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 377 KIKIIAPPERKYSVWIGGS-ILASLSTFQQMW--ISKEEYDESG 255
           K+K +  P ++Y + IGGS  + +     Q W  ++ EEY E+G
Sbjct: 163 KLKNVRSPGKRYRLAIGGSPFIQNERPKWQCWEAMTDEEYQEAG 206


>SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)
          Length = 181

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 371 KIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVH 240
           K++   + KY + I G+    L+ F    ISK EY    P I +
Sbjct: 50  KVVVIVDYKYELDIRGTKFGELTGFDPKVISKTEYGSKLPNITN 93


>SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)
          Length = 369

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 393 RALDHQDQDHRSPREEVLRMDRWI 322
           + LDH+ + H   ++E+ R+ +WI
Sbjct: 62  KELDHKSELHSKQKKEIKRLKKWI 85


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 215 PRDPGAVWCCARPSSERNRQYVVPSDT 135
           P DPG++W    PS E  ++Y  P DT
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDT 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,325
Number of Sequences: 59808
Number of extensions: 226632
Number of successful extensions: 673
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)