Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31904
         (424 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         133   3e-33
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         133   3e-33
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         133   3e-33
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          130   2e-32
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             23   3.5  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   6.0  
AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.         22   8.0  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  133 bits (321), Expect = 3e-33
 Identities = 61/65 (93%), Positives = 63/65 (96%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  133 bits (321), Expect = 3e-33
 Identities = 61/65 (93%), Positives = 63/65 (96%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  133 bits (321), Expect = 3e-33
 Identities = 61/65 (93%), Positives = 63/65 (96%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IV
Sbjct: 312 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  130 bits (315), Expect = 2e-32
 Identities = 60/65 (92%), Positives = 61/65 (93%)
 Frame = -3

Query: 422 DRMXKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 243
           DRM KEIT+LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ MWISK EYDE GPGIV
Sbjct: 312 DRMQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQTMWISKHEYDEGGPGIV 371

Query: 242 HRKCF 228
           HRKCF
Sbjct: 372 HRKCF 376


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 DGCVQNSDEHNTTQHRGHAAAL 223
           +GCV++ +EH      G+ A+L
Sbjct: 33  EGCVRSREEHARAGQEGNVASL 54


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 226 KQRGRVTPVLCGVVLVRVLNATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLI 62
           + R R +   C VV + V NA  S  +L I        TP  L   I  ++ N +
Sbjct: 533 RSRNRYSGRYCAVVTLDVTNAFNSASWLAIANALQRINTPKYLYDIIGDYFRNRV 587


>AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.
          Length = 187

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 138 ITRYNVLTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAG 254
           +TR         T T+TT   T  T P C   L   + G
Sbjct: 114 VTRTKATVAPKSTTTTTTVKPTTTTPPPCPPTLTTFNGG 152


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,818
Number of Sequences: 2352
Number of extensions: 7204
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)