Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31903
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07) 89 3e-18
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 33 0.18
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 31 0.56
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 31 0.74
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 2.3
SB_654| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-25) 29 3.0
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12) 29 3.0
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8) 28 4.0
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05) 28 5.3
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2) 27 6.9
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 27 6.9
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
Length = 406
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/103 (45%), Positives = 61/103 (59%)
Frame = +2
Query: 206 VNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYT 385
V + + A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G PG AY
Sbjct: 7 VRPQQAAAVVAKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYY 66
Query: 386 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHL 514
PPP L V + + +PS+ +I+A I++DHL
Sbjct: 67 PPPVLG----KPVAVATAMPSAVDQSNITA-------IVEDHL 98
>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
Length = 667
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 210 MPIG*RAPPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 389
+P G ++PP +P +P+ R GSP+ P R + S R + SQ+P
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315
Query: 390 RP 395
+P
Sbjct: 316 QP 317
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 31.1 bits (67), Expect = 0.56
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +2
Query: 152 SERFASWLLNKPQTAAVSVN-ANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHAS 328
+ R + LN+ A +S N A RL ++ ++ P + S + N + P+ H
Sbjct: 34 AHRSLKFTLNRSMIARLSDNRAPRLGTNNSSYPGIRASWE-----INNKMVDSPSDFHHD 88
Query: 329 WDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 475
W R A + G A + PP P ++ P LVP + P ++A
Sbjct: 89 W----RRALDSLHQGHAPSRPPTPDPQPTHQNPSPGLVPIAIRDPDLTA 133
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 30.7 bits (66), Expect = 0.74
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 439 ERCERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 275
E C + + ++ R+ GR VCG + SVC+ E P + V VG + G D
Sbjct: 355 ETCGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 383 TPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 487
TPPPN + LTSLVP+ G AGS +
Sbjct: 386 TPPPNTVAGQTSAYQLTSLVPTQGTQVLSDAGSNV 420
>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 338 FFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGM 460
F R+ + +P +PPP P + P SL P++GGM
Sbjct: 35 FPRHQASFTEPSPDSSPPPPRTPVAPSTSPAVSLGPAAGGM 75
>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 893
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 514 EVIVDYLLVYRGTC*NRRHSAARWHERCERDLILVVWREIGRRRVCGAWLSSVCRI 347
+V V+Y YRG + +R H R E ++ + R +R G W S+ R+
Sbjct: 140 KVCVEYHSFYRGKTEYQAIEESRTHARPEPKIVRTLSRRYSKRSDSGTWSRSLRRL 195
>SB_654| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-25)
Length = 293
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 231 ELFSLLAFTETA-AVCGLFRSHDANLSLWPDLEMLNTILARCMIVICY 91
++ +L+ FT T A+ +F A + W +L IL C++++CY
Sbjct: 135 KVLALIWFTATIEAIPSVFLYGRALMVYWVTHVILTVILPACVVIVCY 182
>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
Length = 660
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 362 AQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 475
+QPG Y PPP L +K P SL S +P IS+
Sbjct: 452 SQPGYKYRPPPRL---DKGHTPNLSLYLQSFFLPKISS 486
>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
Length = 677
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 350 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINE 493
AT P YTP P ++ VPL + P+ G +P+ + SP E
Sbjct: 234 ATPTHSPLRLYTPSPAGRSQLQSPVPLRLMSPALGQVPATNTRSPFLE 281
>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
Length = 509
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 430 ERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLDVS*TGA 257
E ++ V +E R + AW++ EK R G + EPC++ D+ TGA
Sbjct: 161 ESKMVFSVIKEWSREHLVEAWMTDAKAACEKAGVRLPEGCCLQEPCMICSDDL--TGA 216
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 146 GQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHA 325
GQSE+ + ++ Q A+ V S A +G S ++ + LA+ + +H+
Sbjct: 886 GQSEQNVREVFSRAQAASPCVIFFDELDSLAPNRGRSGDSGGVMDRVVAQLLAELDGLHS 945
Query: 326 SWDAFFRNATN 358
+ D F ATN
Sbjct: 946 TCDVFVIGATN 956
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 150 WPDLEMLNTILARCMIVICYDPLVCQ 73
W + IL+RC + CY+P C+
Sbjct: 3850 WQACSVAFMILSRCYAIACYNPTSCE 3875
>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
Length = 404
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 383 TPPPNLAPYNKNEVPLTSLVP 445
TPPP AP K +PLT + P
Sbjct: 250 TPPPKPAPSLKTTIPLTDVPP 270
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 377 RRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKL--NWSH*GRVPPRWS 228
RR++ CG++ P LG R + +W+RR + W+ G P W+
Sbjct: 1438 RRVSGNGGQRCGRIQPPILSDILGPRNIATSWARRVMGPEWNVSGLRPSTWN 1489
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 338 FFRNATNGAQPGAAYTPPPNLAPYNKNEVP 427
F R G P Y PPP YN+ VP
Sbjct: 351 FQRRILQGQPPPGTYYPPPPQGNYNQYPVP 380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,969
Number of Sequences: 59808
Number of extensions: 357779
Number of successful extensions: 2672
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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