Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31903
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    96   1e-20
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.     29   1.5  
U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.     29   1.5  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   4.6  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    27   8.0  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   8.0  

>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
 Frame = +2

Query: 107 MHRARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAA---EPFLNGSSSAYV 277
           MHRA ++  ++   +     +    K   +A ++  +R +S  AA   EPFLNGSSS Y+
Sbjct: 1   MHRASLICRLASPSRINAIRNASSGKSHISASTLVQHRNQSVAAAVKHEPFLNGSSSIYI 60

Query: 278 ETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGG 457
           E MY AWL DP+SVH SWDA+FRN   GA PG A+  PP  A      V   +   ++  
Sbjct: 61  EQMYEAWLQDPSSVHTSWDAYFRNVEAGAGPGQAFQAPPATAYAGALGVSPAAAQVTTSS 120

Query: 458 MPSISAGSPINEKIIDDHL 514
            P+    +  + + I DHL
Sbjct: 121 APATRLDTNASVQSISDHL 139


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 272 YVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 394
           Y+ +  + +  DP+S+ A W A F N  +    G  ++  P
Sbjct: 292 YITSQNHGYAVDPDSLPADWKALFTNENDKTNEGIVHSSKP 332


>Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical
           protein F58A3.1c protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPNLAPYN-KNEVPLTSLVPSSGGMP 463
           PPPNL P+   N++P + + P  G MP
Sbjct: 529 PPPNLPPHTMSNQMPNSRMPPMQGQMP 555


>Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical
           protein F58A3.1b protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPNLAPYN-KNEVPLTSLVPSSGGMP 463
           PPPNL P+   N++P + + P  G MP
Sbjct: 478 PPPNLPPHTMSNQMPNSRMPPMQGQMP 504


>Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical
           protein F58A3.1a protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPNLAPYN-KNEVPLTSLVPSSGGMP 463
           PPPNL P+   N++P + + P  G MP
Sbjct: 492 PPPNLPPHTMSNQMPNSRMPPMQGQMP 518


>U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPNLAPYN-KNEVPLTSLVPSSGGMP 463
           PPPNL P+   N++P + + P  G MP
Sbjct: 479 PPPNLPPHTMSNQMPNSRMPPMQGQMP 505


>U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPNLAPYN-KNEVPLTSLVPSSGGMP 463
           PPPNL P+   N++P + + P  G MP
Sbjct: 492 PPPNLPPHTMSNQMPNSRMPPMQGQMP 518


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +2

Query: 221 LKSSTAAEPFLNGSSSAYVETMYNAWLAD-PNS-VHASWDAFFRNATNGAQPGAAYTPPP 394
           L+ ++A+  +   +++  ++ ++   +A+ PN  V+  W+A F+ +T+  QP    TP P
Sbjct: 371 LQGNSASNQWYTSTTNT-MKVVFRPCIANCPNDGVNYRWEADFKPSTDVTQPPVTVTPNP 429

Query: 395 N 397
           N
Sbjct: 430 N 430


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 26/118 (22%), Positives = 47/118 (39%)
 Frame = +2

Query: 131 NISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADP 310
           + S +GQ+  + +   N P     S ++ +  +   +  +   S+  Y    YN   A  
Sbjct: 51  SFSSNGQA-MYQTGTTNYPTLYQPSSSSPQYSNGAPSTTYSPTSTYGYSSQNYNPSSASS 109

Query: 311 NSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSP 484
           ++V+ +    + N     Q   AY      +PY    VP T+   S  G   ++AG P
Sbjct: 110 SNVYRNPSTSYGNTQQSNQNYVAYDTTNQNSPYYYQRVPSTAQYNSVLG---VNAGFP 164


>Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical
           protein M117.4 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 365 QPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 499
           +P A   PPP+ AP      PL++ VPS+G  P  SA  P ++K+
Sbjct: 161 KPLAKPLPPPSAAP--PPVAPLSAPVPSTGAPP--SAVPPADKKM 201


>AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical
           protein F23C8.13 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 398 DWAAACMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSR 276
           D  +  MRR  + RLS C +   +TR    GR  +  T SR
Sbjct: 73  DGESVMMRRRRQARLSMCNEQREQTRHVVSGRATLRMTSSR 113


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 266 SAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGA 376
           ++Y   + N+     PNS H+ +  F R+A+ GAQP A
Sbjct: 635 TSYAANLQNSMQQSAPNSGHSGYATFDRSASLGAQPQA 672


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
 Frame = +2

Query: 191 TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQP 370
           T  + V  +R +  T  + + +  SS  V T     ++ P   H S+  +F N  +    
Sbjct: 391 TQGIEVPNSRTRDGTRPDCY-SIQSSRTVNTKECVGVSLPGPCHGSFQRYFYNEDSQKCE 449

Query: 371 GAAYTP-PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 499
              Y+    N   Y   E       P   G+P    G P+  KI
Sbjct: 450 QFTYSGCGGNGNNYESREACEDRCAPPPVGLPKCEIGEPLKTKI 493


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 266  NWSH*GRVPPRWSSSAYWHLLKP 198
            +WS   R  P +SSS Y+HL  P
Sbjct: 1491 SWSSLDRCSPIYSSSKYYHLTNP 1513


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 386 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSP 484
           PPP +   +   +P    +P + GMP  SAG P
Sbjct: 422 PPPGVPGLSATVLPQHQSMPLNYGMPLFSAGFP 454


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 335 AFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSS 451
           AFF +   G+  G + TPPP+  P     +P+ +  P S
Sbjct: 18  AFFNSLFGGSNCGCSCTPPPSTCP--TTCLPIMTCTPPS 54


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 266  NWSH*GRVPPRWSSSAYWHLLKP 198
            +WS   R  P +SSS Y+HL  P
Sbjct: 1493 SWSSLDRCSPIYSSSKYYHLTNP 1515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,492
Number of Sequences: 27780
Number of extensions: 260777
Number of successful extensions: 900
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)