Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31903
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 501 IIFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 406
           +IFS +G  A  +  P  D  +   G +FL+Y
Sbjct: 385 VIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 383 TPPPNLAPYNKNEVPLTSLVPSSGGMPSIS 472
           TP  ++   +   VP+TSL  SS  + SI+
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 501 IIFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 406
           +IFS +G  A  +  P  D      G +FL+Y
Sbjct: 332 VIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 460 HSAARWHERCERD 422
           H    +H+RC RD
Sbjct: 12  HGGLYYHQRCSRD 24


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = +2

Query: 389 PPNLA-PYNKNEVPLT 433
           PP LA P N N  PLT
Sbjct: 214 PPTLACPLNPNPQPLT 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,957
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)