Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31902
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 4.6
AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical ... 28 4.6
AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine r... 28 4.6
Z70208-7|CAA94139.1| 287|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 27 6.0
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81461-4|CAB62798.1| 256|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 27 8.0
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 27 8.0
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = -3
Query: 160 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 65
++C+ +PAR+ G PGP GQ GE H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227
>AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical
protein Y53H1B.1 protein.
Length = 403
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -1
Query: 426 TYHTQYNTR**SFRRFPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 247
TY+ N F + + V+T+ S+ +N PPR GP S S S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289
Query: 246 SD 241
+D
Sbjct: 290 ND 291
>AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine
receptor, class u protein28 protein.
Length = 332
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 385 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFYRL 498
AE SLT + +IC Y I I A ++SI ++Y +
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYYAI 289
>Z70208-7|CAA94139.1| 287|Caenorhabditis elegans Hypothetical
protein F54B11.7 protein.
Length = 287
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 318 PTTPTAVKPPRVGPKTSLNHS-IGSSD 241
PTTP A KP PKTSL+ S GS+D
Sbjct: 69 PTTPPA-KPKEPAPKTSLSKSDSGSAD 94
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 186 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 85
L G+P ++G++ P+ EG++ G ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 363 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 247
VT TS K + TP + KPPR P+T L+ S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 363 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 247
VT TS K + TP + KPPR P+T L+ S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151
>Z81461-4|CAB62798.1| 256|Caenorhabditis elegans Hypothetical
protein C04F12.6 protein.
Length = 256
Score = 27.1 bits (57), Expect = 8.0
Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Frame = +2
Query: 104 RPGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLPIE*F-SEVFG 280
+ G A TPS G P + P+ A P TH P+ + + VFG
Sbjct: 55 KEGSEARTPSAAGSAAPTAPAEGAAPAAGAPAAVAPKPPMAATHDPNYQTLAGLDNNVFG 114
Query: 281 PTRGGFTAVGVVGKLTKLDHLEEVKVVTRFP 373
G A G G D + K T P
Sbjct: 115 KKDGAAPAAGGGGPAAPAD--QNAKAATHDP 143
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 363 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 247
VT TS K + TP + KPPR P+T L+ S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 363 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 247
VT TS K + TP + KPPR P+T L+ S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,942
Number of Sequences: 27780
Number of extensions: 262748
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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