Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31899
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   1.3  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    27   2.2  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   6.7  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   6.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.9  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 422 FCFSFDVYPVGRIPLFVLSLFYTKV*VFYLSIEALRSLPGQLVLHNNIAVQLTNIYH 252
           + F  D  P+  IPL V  L    V  F   +   RSL  +L  H  +A  L + ++
Sbjct: 540 YFFHMDDVPLDNIPLVVCDLDKNSVSTFGKIVRLSRSLRSKLQAHLKLAAPLHDKFY 596


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 425 QFCFSFD-VYPVGRIPLFVLSLFYTKV*VFYLSIEALRSLPG 303
           Q CF+ D V+P G  P+ V S+    + V    I+ LRSL G
Sbjct: 387 QGCFAKDNVFPTGYQPIGVCSVEDCLILVTVSDIQVLRSLTG 428


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 145 RSLSFLYSGCPSLVDWNEKLLIVLLIIR 62
           +S+  +Y+G P   D NEK+L+  L  R
Sbjct: 14  KSIEPIYTGGPVAFDSNEKILVTALTDR 41


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 302 DPADFVVPQSINKRPKLLYKINLKQTKESVRRGTHQRKNK 421
           + A+  +P S NKR     +  ++Q +E   R   Q+KN+
Sbjct: 259 EQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNE 298


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 23  PTLCLLKL-LFTSGAYYQEYNQEFLIPIHQARTTAIQKTKTSTSQSDRWVFT 175
           P L L  + +F  G Y  +Y   FL  +     T    + TS SQS + V T
Sbjct: 710 PDLFLKNIPVFVDGLYRVDYLDLFLTSLKPENVTTGMYSDTSKSQSQQSVTT 761


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 317 VVPQSINKRPKLLYKINLKQTKESVRRGTHQRKN 418
           VVP  + + P LL   N+  T+E +RR     +N
Sbjct: 774 VVPAPLGRVPVLLRGGNILITRERIRRAAELTRN 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,746
Number of Sequences: 5004
Number of extensions: 40723
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)