Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31899
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0560 + 34726338-34727243                                         29   1.7  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    28   3.9  
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    27   6.8  
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991...    27   6.8  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    27   8.9  

>03_06_0560 + 34726338-34727243
          Length = 301

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 188 WAPATA*DILRNQYNIIQLLVSDKY*LIVQQYCYVKLADPADFVVPQSIN 337
           WAPATA   +     ++Q LVS  +  +V+ + +V  +   D V+P  ++
Sbjct: 159 WAPATALGSIVGSGELVQKLVSGGFDCVVKVWAFVNGSWKLDSVLPSDMH 208


>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 59   GAYYQEYNQEFLIPIHQARTTAIQKTKTSTSQS 157
            G Y +EY+QE L P  Q   T +++ + S + S
Sbjct: 1655 GLYIREYSQEILQPCFQTNLTCLKRLEVSGTGS 1687


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 178 LSEYPPITLRSRSLSFLYSG 119
           LS++ P++ RSRSL+ +YSG
Sbjct: 298 LSKWVPVSERSRSLALVYSG 317


>01_01_1227 +
           9912646-9913056,9913306-9913413,9913517-9913672,
           9914110-9914325,9914436-9914645,9914722-9914859,
           9915076-9915177,9915508-9915603
          Length = 478

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 178 LSEYPPITLRSRSLSFLYSG 119
           LS++ P++ RSRSL+ +YSG
Sbjct: 236 LSKWVPVSERSRSLALVYSG 255


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 292 YITILLYN*LIFITNKQLYYVILVP*NILSGSRRPEIQLS 173
           Y+ I L    IF+    L +++LVP N  SG+   E  LS
Sbjct: 98  YVRIYLLGLKIFVPIAVLAFIVLVPINWASGTLEKEKSLS 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,105
Number of Sequences: 37544
Number of extensions: 223107
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)