Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31899
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)                     30   0.98 
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   4.0  
SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)           27   6.9  

>SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 641

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 266 LIVQQYCYVKLADPADFVVPQSINKRPKLLYKINLKQTKESVRRGTHQRK 415
           ++  +Y Y++  +PA      +   +P+ L K++ K+ +E +   TH RK
Sbjct: 275 MVTLEYPYMECQNPAQIYRRVTSGIKPECLEKVSSKEIREIIEGCTHPRK 324


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 35   LLKLLFTSGAYYQEYNQEFLIPI 103
            L  ++F SG + QE+N  F+IPI
Sbjct: 1313 LFNIIFRSGVFPQEWNLGFIIPI 1335


>SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)
          Length = 108

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 151 RSRSLSFLYSGCPSLVDW 98
           R R ++ LY  CP LVDW
Sbjct: 46  RWREVALLYGTCPCLVDW 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,967
Number of Sequences: 59808
Number of extensions: 273348
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)