Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31899
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81506-3|CAB04130.1|  197|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 439 LNKNNNFVFPLMCTPSDGFLC 377
           L  NNNF  PL CTP D   C
Sbjct: 26  LTSNNNFNQPLTCTPQDPCSC 46


>Z81506-3|CAB04130.1|  197|Caenorhabditis elegans Hypothetical
           protein F16H6.4 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 311 DFVVPQSINKRPKLLYKINLKQTKESVRRGTHQRKNKIVIF 433
           +F + QS  K  ++  KI+ ++ + ++  G+H +KN + IF
Sbjct: 61  NFKMEQSYEKVDEIPEKIDAERIRYAIHLGSHSQKNVLQIF 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,264
Number of Sequences: 27780
Number of extensions: 220192
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)