Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31899
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   10.0 

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 281 IAVQLTNIYH*QAIVLCYIGSVKYLKR*PAPRDTTK*IPTDHFEKSK 141
           +A+ L  I+     V C +G+V  + + P+  DTTK I   + + +K
Sbjct: 542 VAMVLDRIFLWIFTVACVLGTVLIILQAPSLYDTTKPIDIKYSKIAK 588


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 156 VIGGYSLSCISGRRLPLKIFYGTNIT*YNCLL 251
           ++  Y  +CISGR   +  + G + + +N ++
Sbjct: 293 IVTSYCKTCISGRAFQVLTWLGYSNSAFNPII 324


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 450 FHIYLPFKPSLDFTNHSR 503
           F  +LP  P+LD+ ++SR
Sbjct: 316 FDEFLPPPPNLDYHDYSR 333


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 447  HFHIYLPFKPSLD 485
            + H+Y P K SLD
Sbjct: 998  NLHVYAPLKISLD 1010


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,771
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)