Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31898
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.72 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   5.1  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 339 DNDVAPEGYHYLYETENKI 395
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
 Frame = +1

Query: 358 KATTTCTRPRTRFSLKKPA----RSRTLAPKTKASRSRDSTNTLAPTVS------PTEXT 507
           K TTT +   T FS  KPA     ++  AP +  ++   ST    PT S      PTE T
Sbjct: 286 KGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPATSTGDNKPTFSFGNTSKPTENT 345

Query: 508 T 510
           +
Sbjct: 346 S 346


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDST---NTLA---PTVSPTEXTTL 513
           T  RP  + +LK P  S + AP++ +S +  S    N +A   P   PTE ++L
Sbjct: 500 TVCRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLTRNFVAHRDPPPPPTETSSL 553


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
 Frame = +1

Query: 94   DPVLLEVPEEPTSEPRRTSANTLVMLTRDPAXXXXXXXXXXXXXQSHPHTLPARWS---H 264
            D +L + P  P   PR + +    +LTRDP               +HP      W    H
Sbjct: 893  DAILSDEPLYPIHMPRDSVSILQQLLTRDPKKRLGSGPNDAEDVMTHPFFSNINWDDIYH 952

Query: 265  PHTLP 279
              T P
Sbjct: 953  KRTQP 957


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 512 SVVYSVGDTVGANVFVESLDLDAFVFGANVL 420
           +V Y + DT+ A   VE+ D      GANV+
Sbjct: 79  TVTYELNDTLNAKAEVEAKDNVYLWLGANVM 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.124    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,106
Number of Sequences: 5004
Number of extensions: 23192
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)