Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31898
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   10.0 

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 206 HDGQGNNAGSLVSITKVFA 150
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 206 HDGQGNNAGSLVSITKVFA 150
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 206 HDGQGNNAGSLVSITKVFA 150
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 452 LDAFVFGANVLDLAG 408
           L AF+FGAN L   G
Sbjct: 53  LSAFLFGANALFTPG 67


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 149 QQIPW*CLQGIQHCS 193
           QQI W  L+ IQ CS
Sbjct: 557 QQIAWMALKMIQACS 571


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 246 ASKVVTPTYVASKVVPPSGAGYXYKYGII 332
           A  V+ P  +   ++P   AG    YG++
Sbjct: 42  AMSVMRPELIMKSIIPVVMAGIIAIYGLV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.124    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,453
Number of Sequences: 438
Number of extensions: 1750
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)