Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31896
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   2.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.1  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   6.7  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   8.9  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.9  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   8.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.9  

>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 318 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 461
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = -1

Query: 318  SRISGRILRNADLIIRMCVMTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREETLSHS 139
            S +   +L + D I+   +  +E  +      ++  T H       +   S+REE L  S
Sbjct: 1169 SELLNNLLNDFDKILNFILYNIESKIQTHASFNVTITEHNHVESKARTGFSKREEKLVRS 1228

Query: 138  C 136
            C
Sbjct: 1229 C 1229


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   LVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 116
           +V LV GT AF+M   EF   +    +  +   ILKE
Sbjct: 279 VVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 51  HEFSRTRLGDAIDKTSLKILKESYNLADDKNVIAS 155
           + F+R   G       +K+L E+Y+L D+++++ +
Sbjct: 504 YAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVA 538


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 355 SWPTRSPGQR 384
           +WPTRSPG R
Sbjct: 174 AWPTRSPGDR 183


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 298 NSTRNS*LSPIKYTFPTSISWPTRSPGQRICSEAKWTTLTSA 423
           NST ++ +S    ++ TS   PT S      S A  TT TSA
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSA 436



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 298 NSTRNS*LSPIKYTFPTSISWPTRSPGQRICSEAKWTTLTSA 423
           NST ++ +S    ++ TS   PT S      S A  TT TSA
Sbjct: 509 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSA 550


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 310 NS*LSPIKYTFPTSISWPTRSPGQRICSEAKWTTLTSALRRMP 438
           +S +S I Y F T IS  +   G +  +   + +LTS+ +++P
Sbjct: 374 SSEISSIIYNFSTPISGSSFPDGFKPINPTSFPSLTSSTKKIP 416


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 FLTVANKIYVSDQYKLADAFSRTANLFRSEVDNI 413
           FL   N+I V ++  LAD F   A + +  + N+
Sbjct: 59  FLNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNL 92


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 396 SEVDNINFSAPKNAADIINRWADEQ 470
           + + NINF AP+   +I++   +EQ
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQ 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,305
Number of Sequences: 5004
Number of extensions: 42359
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)