Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31896
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 46 1e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.005
11_01_0750 - 6315126-6315896,6316371-6316784 34 0.059
03_05_0294 + 22855503-22855946,22856346-22856399 34 0.078
11_02_0011 - 7337618-7338496,7338596-7338991 32 0.31
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 0.73
06_01_0059 - 510856-511499,511595-511805 29 1.7
09_02_0226 - 6007656-6008063,6012166-6012678 29 2.2
11_02_0012 - 7346282-7347136,7347234-7347593 29 2.9
11_01_0771 + 6453130-6454488 28 3.9
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 28 3.9
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 5.1
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 28 5.1
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 27 6.8
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 8.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 46.4 bits (105), Expect = 1e-05
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Frame = +3
Query: 135 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESSHTYGLLNQRYAEFDP 308
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 309 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINF-SAPKNAADIINRWAD 464
+ AN ++V +L A++R A+ +R+E ++F + A IN W +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 465 EQTQGHIKTPVSEDKID 515
T G IK + +D +D
Sbjct: 151 SATAGRIKDFLPKDAVD 167
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.9 bits (84), Expect = 0.005
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = +3
Query: 138 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYG------LLNQRYAE 299
+NV SPL + + LSL +GAG +++++ LGG + E H + +L
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 300 FDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFSA-----PKNAADI 446
P+ + A+ ++V L F A +++E +++F P N A+I
Sbjct: 95 GGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQTKWLLLPSNLANI 148
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 34.3 bits (75), Expect = 0.059
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Frame = +3
Query: 141 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----SSHTYGLLNQR 290
N S V + L+L GA ++ ++ + LG GG A S +L R
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 291 YAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF-SAPKNAADIINRWAD 464
P+ L A ++ L+ F A N++ S +F + P++A D IN W
Sbjct: 93 STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151
Query: 465 EQTQGHIKTPVSEDKID 515
+ T+G + T + ID
Sbjct: 152 DSTKGTVTTLLPAGTID 168
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 33.9 bits (74), Expect = 0.078
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +3
Query: 129 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESSHTYG--LLNQRYA 296
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 297 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF 419
+ P + A+ +++ L +F A +++E +++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 31.9 bits (69), Expect = 0.31
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Frame = +3
Query: 126 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG------EAQESSHTYGLLNQ 287
++ +KN++ SP + L+L +GA + +E+ +LG E+ + GL ++
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 288 RYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFS-APKNAADIINRWA 461
A P+ ++ A ++ + +L A+ + A +++ NF PK + IN+W
Sbjct: 87 S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
Query: 462 DEQT 473
+ T
Sbjct: 145 SKAT 148
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 258 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 166
+L PPLP G PLS P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 168 MLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQRYAEFD-PKFLTVANKIYVS 344
+LL + GAG S ++ GGG +++H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 345 DQYKL--ADAFS 374
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 365 RVLQDSESVQKRSGQH*LQRSEECR*YHQPLGGRTDSRTHKDSCERR 505
R L+D ++Q + + CR +PL R D RTH+ +C RR
Sbjct: 218 RPLKDFRTLQTHYKRKHCAKPFACRKCGKPLAVRGDWRTHEKNCGRR 264
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 108 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 257
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 138 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 257
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 237 GGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSEVDNIN 416
GGG E+S YGLL R + P T+ + + ++ + +S + N R E N +
Sbjct: 233 GGGLPPEASRLYGLLQHRQS---PAIATMQTLDFKNSSFRNQE-WSFSFNHQRKETMNPS 288
Query: 417 FSAPKNAADIINRW 458
S+ AA I RW
Sbjct: 289 SSSSTTAA--IRRW 300
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 234 GFPLSLPWTVHRLQTRTRKAAASRREETLSH 142
GF LS+P T L+ R A ASR TL H
Sbjct: 322 GFHLSVPTTKTFLRRFLRAAQASRNNHTLEH 352
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 213 KEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANK 332
KE+ E+ G + +E+S LN +Y + K+ VANK
Sbjct: 847 KEQTSEVHGARKRKETSPADSGLNSQYGVTESKYELVANK 886
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +1
Query: 229 KSLGEGRLKSHHTHTDY*ISVTQNSTRNS*LSPIKYTFPTSISWPTRSPGQRICSEAKWT 408
K+ +G L + + + + + +N T + S K P S S RSP +R S +
Sbjct: 375 KATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPSRRAKSRWEPV 434
Query: 409 TLTSALRRMPLISSTVGRTN 468
++ LIS +TN
Sbjct: 435 VEEKVANKVELISKESAKTN 454
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 346 TSISWPTRSPGQRICSEAKWTTLTSALRRMPLISSTVG 459
T++S P+R P +C WT T LR I T G
Sbjct: 28 TNLSHPSRGPVDHLCGRDSWTAKT--LRNEAQIDCTRG 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,260
Number of Sequences: 37544
Number of extensions: 316080
Number of successful extensions: 986
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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