Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31896
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 39 0.002
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 39 0.002
SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2) 30 1.3
SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 29 1.7
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 5.3
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 27 6.9
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 27 6.9
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.2
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Frame = +3
Query: 171 LLLSLYESGAGAQSKEEIREILGGGEAQ--ESSHTYGLLNQRYAEFDPKF--LTVANKIY 338
+ L L G+ + +I I G E++ E+ T+ ++ D + + + NKI+
Sbjct: 3 MALGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62
Query: 339 VSDQYKLADAFSR-TANLFRSEVDNINF-SAPKNAADIINRWADEQTQGHIK 488
D++++ + F T + SE+ ++F + +A +N W +QT+G+IK
Sbjct: 63 GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIK 114
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +3
Query: 141 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG-GGEAQESSHTYGLLNQRYAEFDPKFL 317
N+ SP +++ L++ GA + ++ + + E H + L + D +
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDF-LQALNASNSDGNQI 87
Query: 318 TVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFSAPKNAA-DIINRWADEQTQGHIKT 491
+AN+++ +++ + F + + F +E+ +++ N A D +NRW +++T+ IK
Sbjct: 88 LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147
Query: 492 PVSE 503
+ E
Sbjct: 148 LIPE 151
>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
Length = 157
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = -1
Query: 273 RMCVMTLEPPLPQGFPLSLPWTV-----HRLQTRTRKAAASRR-EETLSHS-CRQ 130
R+C+ T PPLP F ++P + H T R + SRR + ++ H CRQ
Sbjct: 81 RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135
>SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 IKYTFPTSISWPTRSPGQRICSEAKWTTLTSALRRMPL 441
+ ++FP WP+ QR+ S W ++ + RR PL
Sbjct: 40 VYWSFPQLDPWPSVLAFQRVASHHSWPSVLACQRRGPL 77
>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
Length = 354
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 140 ECDSVSSRRDAAAFLVRVWSRCTVQGRDKGNPWGR 244
E DSV + +D+ A W+R + + K NPW R
Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 330 YWRQSRISGRILRNADLIIRMCVMTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREET 151
Y R+S ++ A R C+++L + G S W VH++ T +K R++
Sbjct: 78 YGLDGRVSDKVF-TATCRARFCLLSLGFTIGFGAMFSKTWRVHQIFTNVKKVKKVVRDKD 136
Query: 150 L 148
L
Sbjct: 137 L 137
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 222 IREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 353
I I GGGE E H G+L + FD F AN + +S +Y
Sbjct: 81 IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 491 SLYVSLSLFVRPTVDDIS--GILRSAEVNVVHFASEQIRCPGERVGQLILVGN 339
SLY L L + P +D S I +S ++ V++ E+I C GERV +LV N
Sbjct: 538 SLYDGL-LKLFPECNDASELSIAQSGKLTVLNSMLEEIHCTGERV---VLVSN 586
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +3
Query: 222 IREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSE 401
+ E++ E SHTY L + +F+T ANK+YVS L T N+
Sbjct: 716 VGELVTIDEDSAQSHTYVLTDDAAG----RFVTRANKLYVSRSANLDYESKNTYNITIRS 771
Query: 402 VDNIN 416
D N
Sbjct: 772 TDTGN 776
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 198 LQTRTRKAAASRREETLSHSCRQLGCRIP*ESSRRSCRWHRRVLSLRIHDRTCRTPAFH 22
LQTR + +R SH+CR + + +R R H R RTCR +H
Sbjct: 311 LQTRMQSRMQTRYRHACSHTCRHITDTL---QTRMQIRMHTRY--RHACRRTCRYACWH 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,403
Number of Sequences: 59808
Number of extensions: 348565
Number of successful extensions: 1950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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