Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31896
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 215 GRDKGNPWGRGGSR 256
           GR KG   G+GGSR
Sbjct: 79  GRGKGRGHGKGGSR 92



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 212 QGRDKGNPWGRGGSR 256
           +G  KG   GRGG+R
Sbjct: 84  RGHGKGGSRGRGGNR 98


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 169 CCCFPCTSLE 198
           C C PCTS+E
Sbjct: 113 CMCRPCTSVE 122


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 318 SRISGRILRNADLIIRMCV 262
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 366 RRPTYTGRKRIFYWRQSR 313
           R P+  GRK+   WR+ R
Sbjct: 121 RNPSVVGRKKSSGWRKLR 138


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 162 REETLSHSCRQLGCRIP 112
           RE+ ++++CR L   +P
Sbjct: 439 REDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 162 REETLSHSCRQLGCRIP 112
           RE+ ++++CR L   +P
Sbjct: 407 REDVINYNCRSLVASVP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,543
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)