Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31896
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 56 2e-08
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi... 41 6e-04
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot... 29 2.5
At2g37960.1 68415.m04659 expressed protein 28 4.3
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 27 5.7
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 27 5.7
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 27 5.7
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 27 5.7
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 27 5.7
At5g28482.1 68418.m03463 hypothetical protein similar to At2g066... 27 7.5
At2g24540.1 68415.m02931 kelch repeat-containing F-box family pr... 27 7.5
At2g06630.1 68415.m00736 hypothetical protein similar to At2g121... 27 7.5
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p... 27 9.9
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = +3
Query: 123 NLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQRYAEF 302
++A+ NV+ SP+ + +LLSL +G+ +KEEI L + + E
Sbjct: 25 DVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTER 84
Query: 303 DPKFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINFSA-PKNAADIINRWADEQTQ 476
L+ A+ +++ L +F N +++ ++F+ P D +N WAD T
Sbjct: 85 SDLCLSTAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFATKPVEVIDEVNIWADVHTN 144
Query: 477 GHIKTPVSEDKID 515
G IK +S D D
Sbjct: 145 GLIKQILSRDCTD 157
>At3g45220.1 68416.m04880 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 393
Score = 40.7 bits (91), Expect = 6e-04
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Frame = +3
Query: 126 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIRE--ILGGGEAQES--SHTYGLLNQRY 293
+A+ N++ SP+ + +LL L +G+ +KE+I +L + + + T +
Sbjct: 25 VANGSNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVSVALNDG 84
Query: 294 AEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFSA-PKNAADIINRWADE 467
E L+ A +++ +F N + + + ++F+ P + +N WA+
Sbjct: 85 MERSDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWAEV 144
Query: 468 QTQGHIKTPVSEDKI 512
T G IK +S+D I
Sbjct: 145 HTNGLIKEILSDDSI 159
>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor, Homo
sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1793
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 201 GAQSKEEIREILGG----GEAQESSHTYGLLNQRYAEFDPKFLTVANKIYV 341
G + E IR L G GEAQ+ +RY + +PK T A+ YV
Sbjct: 693 GMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYV 743
>At2g37960.1 68415.m04659 expressed protein
Length = 480
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 336 YVSDQYKLADAFSRTANLFRSEVDNINFSAP 428
++ D+Y + FS+T +LFRSE ++ ++P
Sbjct: 26 FLVDRYLCDNRFSKTRSLFRSEASSLISNSP 56
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 161 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 63
E RYH +S GF K + G+ + E CP
Sbjct: 886 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 918
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 161 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 63
E RYH +S GF K + G+ + E CP
Sbjct: 856 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 888
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 161 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 63
E RYH +S GF K + G+ + E CP
Sbjct: 880 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 912
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 161 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 63
E RYH +S GF K + G+ + E CP
Sbjct: 836 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 868
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 161 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 63
E RYH +S GF K + G+ + E CP
Sbjct: 856 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 888
>At5g28482.1 68418.m03463 hypothetical protein similar to At2g06630,
At2g12120, At1g45090, At2g05470
Length = 231
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 221 DKGNPWGR--GGSRVITHIRIIKSALRRIRPEI 313
D GNP RV+TH R IK A+ +RP +
Sbjct: 87 DAGNPTAMYFEALRVLTHERDIKGAINLLRPHV 119
>At2g24540.1 68415.m02931 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 4
[Arabidopsis thaliana] GI:10716953; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 372
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 81 AIDKTSLKILKESYNLADDKNVIASPL--GVMLLLSLYESGAGAQSKEEIREILGGGEAQ 254
A +K++ +I +S +LA + + P+ + S + + ++ +LGGG+
Sbjct: 86 AFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGGDVN 145
Query: 255 ESSHTYGLLNQRYAEFDP 308
S+ Y L R++ P
Sbjct: 146 RSAVVYTALTNRWSCISP 163
>At2g06630.1 68415.m00736 hypothetical protein similar to At2g12120,
At1g45090, At2g05470, At5g28482
Length = 231
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 221 DKGNPWGR--GGSRVITHIRIIKSALRRIRPEI 313
D GNP RV+TH R IK A+ +RP +
Sbjct: 87 DAGNPTATYFEALRVLTHERDIKGAINLLRPHV 119
>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 315
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 264 VMTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREETLS 145
++T EP P+ PLS P +LQT T++A AS + L+
Sbjct: 193 LVTKEPISPK--PLSSPRKQQQLQTETKEAKASVSQTKLT 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,790
Number of Sequences: 28952
Number of extensions: 235087
Number of successful extensions: 760
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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