Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31894
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    28   0.050
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    28   0.050
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   10.0 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   10.0 

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 169 CVTAFIATCHCDSGYLFNSEGKCVPVAEC 255
           C+      C C  GYL N +  CVP ++C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 169 CVTAFIATCHCDSGYLFNSEGKCVPVAEC 255
           C+      C C  GYL N +  CVP ++C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 254 VEYDAEAISTDFD----LYFIKKVYLTITKLY 337
           V Y+ E +STD+D    LYF +  +  +  +Y
Sbjct: 417 VNYNPETVSTDYDMSDRLYFEEISFEVVMDIY 448


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 202 DSGYLFNSEGK 234
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 202 DSGYLFNSEGK 234
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 282 VEIASASYSTFGNGHAFSLRVEEVSR 205
           V  A+  Y T   G A ++ +++VSR
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSR 364


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 43  LVSLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELKHTSCV 174
           + S++A AAS +L +   PE+   T      T   P +   S V
Sbjct: 20  IASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAV 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,776
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)