Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31892
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                219   1e-57
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             35   0.034
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       33   0.10 
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             31   0.55 
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   2.2  
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   5.1  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     27   6.7  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   27   8.9  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   8.9  
SB_32081| Best HMM Match : zf-MYM (HMM E-Value=4.8)                    27   8.9  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  27   8.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  219 bits (535), Expect = 1e-57
 Identities = 102/141 (72%), Positives = 118/141 (83%), Gaps = 6/141 (4%)
 Frame = +2

Query: 101 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 262
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 263 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 442
           YKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172

Query: 443 NVSVKELRRGYVAGDSKNNPP 505
           NVSVK+++RG VAGD KNNPP
Sbjct: 173 NVSVKDIKRGNVAGDFKNNPP 193


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 215 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 394
           P R T   L   +   + I G GT+  G + +G +     V      +T +VKS++M  +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163

Query: 395 ALQEAVPGD 421
            + +A  GD
Sbjct: 164 PVDKASQGD 172


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -2

Query: 490 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHT 311
           G T   TTT      V    T ++SRYS++E  + H + +   S        + TW Q  
Sbjct: 86  GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145

Query: 310 SFNSADGHGTNTTDFVY 260
            F++   H +N   + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +2

Query: 230 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEA 397
           ++P    + D Y + G+GTV  G    G+++    ++  P  +       ++S+      
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161

Query: 398 LQEAVPGDNVGFNVK 442
           ++E   G    F++K
Sbjct: 162 VKEVRGGQTASFSLK 176


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 471 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 295
           P      +T    + TLSPGT +   +        S   +A  +TT+ P   T PV+TLP
Sbjct: 17  PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76

Query: 294 TGTVPIP 274
             +   P
Sbjct: 77  PDSTMAP 83


>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -3

Query: 243 RRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSXVPSRNGHESD 64
           RRG     A GR   R    H PS LP       P  + I+ +GS  +   PS  G  + 
Sbjct: 184 RRGRESKNARGRRRGRGEKEHSPSPLPRAFFLPPPPAERIIQDGSRGI-RTPSFRGFRAG 242

Query: 63  SSW 55
            ++
Sbjct: 243 KNY 245


>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 350 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 505
           A+ TT          A+Q E  PG ++G   + + VKEL++   AG +   PP
Sbjct: 49  ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101


>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 335 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 478
           VVF P NI+ +   ++     A ++ +P     + +KN    + R GYV
Sbjct: 14  VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 381 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 256
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 256
           +TD+TS+ M+    TT +      ++T  T    I  I+ TS
Sbjct: 149 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 190



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 256
           +TD+TS+ M+    TT +      ++T  T    I  I+ TS
Sbjct: 163 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 204



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 256
           +TD+TS+ M+    TT +      ++T  T    I  I+ TS
Sbjct: 177 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 218


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 327 PGFNTPVSTLPTGTVPIPP---ILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSL 157
           PG  TPV TL  G+ P+ P   +L+TS    R   ++  +     +R+S+    + L + 
Sbjct: 48  PGLRTPVITLSIGSSPLKPYSHLLFTSMDNLRPRSTMFSS----TTRSSLSPTKTRLDAY 103

Query: 156 RSTCHPLNQGILVEG 112
           RST  P+    ++ G
Sbjct: 104 RST-SPVKTSSVLSG 117


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -3

Query: 327 PGFNTPVSTLPTGTVPIPP----ILYTSC 253
           PG  TPV TL  G+ P+ P    +LY  C
Sbjct: 316 PGLRTPVITLSIGSSPLKPYSHLLLYVIC 344


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 360  VMLAGAKTTMVPGFNTPVS-TLPTGT-VPIPPILYT-SCRGRRRGLSVGRAGGRMASRAS 190
            V+L   K T+       +  T+PT T VP PP         RRRG  + R+G + A    
Sbjct: 3034 VILRSIKRTLCEPVPVTIKPTVPTRTPVPRPPAAAVYPLDKRRRGKDISRSGNQPARSVG 3093

Query: 189  MRHFP 175
            +R  P
Sbjct: 3094 VRWAP 3098


>SB_32081| Best HMM Match : zf-MYM (HMM E-Value=4.8)
          Length = 146

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 122 WLKAPTCCLPCHPEMGTK 69
           WLK P C L C  E GT+
Sbjct: 42  WLKQPFCSLNCKSESGTE 59


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 370 DFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTT 272
           DF+ DV    DNNG  +Q      ADG+  +T+
Sbjct: 49  DFNKDVPDTSDNNG--YQEPDSEQADGYNYDTS 79


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120  PKCLGSRDGRWSVKKAKLTE-NASLKLSMPSCHLPAPLTSP 239
            P C GSRD R++  +   T   +S+KLS  S ++   L +P
Sbjct: 959  PVCFGSRDSRFARFRVPTTGFLSSIKLSRVSGYISCDLNNP 999


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,031
Number of Sequences: 59808
Number of extensions: 414119
Number of successful extensions: 1502
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)