Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31892
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 190 6e-49
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 190 6e-49
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 190 6e-49
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 190 6e-49
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 72 3e-13
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 69 2e-12
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 63 1e-10
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 60 1e-09
At5g19490.1 68418.m02322 repressor protein-related similar to re... 35 0.027
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 32 0.26
At2g31060.1 68415.m03790 elongation factor family protein contai... 32 0.26
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 0.59
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 29 1.8
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 2.4
At2g39560.1 68415.m04853 expressed protein 29 2.4
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 2.4
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 2.4
At5g13580.1 68418.m01570 ABC transporter family protein 27 5.5
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 5.5
At2g26870.1 68415.m03224 phosphoesterase family protein low simi... 27 5.5
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 5.5
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 5.5
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 5.5
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ... 27 9.6
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 9.6
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 27 9.6
At1g56140.1 68414.m06446 leucine-rich repeat family protein / pr... 27 9.6
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 27 9.6
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 27 9.6
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 27 9.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 190 bits (462), Expect = 6e-49
Identities = 91/135 (67%), Positives = 108/135 (80%)
Frame = +2
Query: 98 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 277
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 278 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 457
IGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVK 306
Query: 458 ELRRGYVAGDSKNNP 502
+L+RGYVA +SK++P
Sbjct: 307 DLKRGYVASNSKDDP 321
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 16 KEVSSYIKKIGYNPAAVAFVPISGWHG 96
KEVSSY+KK+GYNP + FVPISG+ G
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEG 198
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 190 bits (462), Expect = 6e-49
Identities = 91/135 (67%), Positives = 108/135 (80%)
Frame = +2
Query: 98 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 277
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 278 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 457
IGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVK 306
Query: 458 ELRRGYVAGDSKNNP 502
+L+RGYVA +SK++P
Sbjct: 307 DLKRGYVASNSKDDP 321
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 16 KEVSSYIKKIGYNPAAVAFVPISGWHG 96
KEVSSY+KK+GYNP + FVPISG+ G
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEG 198
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 190 bits (462), Expect = 6e-49
Identities = 91/135 (67%), Positives = 108/135 (80%)
Frame = +2
Query: 98 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 277
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 278 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 457
IGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVK 306
Query: 458 ELRRGYVAGDSKNNP 502
+L+RGYVA +SK++P
Sbjct: 307 DLKRGYVASNSKDDP 321
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 16 KEVSSYIKKIGYNPAAVAFVPISGWHG 96
KEVSSY+KK+GYNP + FVPISG+ G
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEG 198
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 190 bits (462), Expect = 6e-49
Identities = 91/135 (67%), Positives = 108/135 (80%)
Frame = +2
Query: 98 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 277
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 278 IGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 457
IGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVK 306
Query: 458 ELRRGYVAGDSKNNP 502
+L+RGYVA +SK++P
Sbjct: 307 DLKRGYVASNSKDDP 321
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 16 KEVSSYIKKIGYNPAAVAFVPISGWHG 96
KEVSSY+KK+GYNP + FVPISG+ G
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEG 198
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 71.7 bits (168), Expect = 3e-13
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Frame = +2
Query: 77 PFLDGTXDNMLEPSTKMPWFKGWQVERKEGKADGKC--LIEALDAILP-PARPTDKPLRL 247
P + G+ +E T+ P +V+R + K K L++A+D +P P R T+ P L
Sbjct: 236 PIISGSALLAVETLTENP-----KVKRGDNKWVDKIYELMDAVDDYIPIPQRQTELPFLL 290
Query: 248 PLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPGD 421
++DV+ I G GTV GRVE G +K G V T V VEM + L EA+ GD
Sbjct: 291 AVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGD 350
Query: 422 NVGFNVKNVSVKELRRGYV 478
NVG ++ + +++RG V
Sbjct: 351 NVGLLLRGIQKADIQRGMV 369
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 68.9 bits (161), Expect = 2e-12
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Frame = +2
Query: 185 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF-----A 346
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G V
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREG 308
Query: 347 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 478
+ + V VEM + L GDNVG ++ + ++++RG V
Sbjct: 309 GVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMV 352
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 62.9 bits (146), Expect = 1e-10
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPA 352
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+ P+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPS 506
Query: 353 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 478
++S+E +A A GDNV ++ + ++ G V
Sbjct: 507 GDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDV 548
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/110 (28%), Positives = 57/110 (51%)
Frame = +2
Query: 176 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 355
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V P
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNK 367
Query: 356 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 505
+V ++ + ++ A PG+N+ + + +++ G+V N P
Sbjct: 368 EQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVLSSIVNPVP 417
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 35.1 bits (77), Expect = 0.027
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = -3
Query: 288 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR---HFPSALPSLRSTCHPLNQGILV 118
T + + +TSC RRG GR+ GR S S++ P T P N G L
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLKFEEDLEDGSPESSRTPSPEN-GSLS 150
Query: 117 EGSNMLSXVPSRNGHESDSSWVVANLLDV 31
V S N H S +S V D+
Sbjct: 151 HDDTSWKKVASHNNHHSSNSEVKVRNFDL 179
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.9 bits (69), Expect = 0.26
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +2
Query: 149 VERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 328
V K G L ++ I PP ++ PLR+ L D + G + V G+L G
Sbjct: 225 VSAKTGLGLEHVLPAVIERIPPPPGISESPLRMLLFDSFFNEYKGVICYVSVVDGMLSKG 284
Query: 329 TIVVFAPANITTEVKSVEMHHEALQEA--VPGDNVGFNVKNV-SVKELRRG 472
V FA + + EV V + H L + VG+ V + + KE R G
Sbjct: 285 DKVSFAASGQSYEVLDVGIMHPELTSTGMLLTGQVGYIVTGMRTTKEARIG 335
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.9 bits (69), Expect = 0.26
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 137 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPLQDVYKIGGIGTVPVG 298
+GW K+ D K + + LDA++ PP D+P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 299 RVETGVLKPG 328
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 0.59
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 158 KEGKADGKCLIEALDAILPPARPTDKP 238
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 32 TSRRLATTQLLSLSCPFLDGTXDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAIL 211
TS A++ S++ T NM PS +P V K K +EAL + L
Sbjct: 358 TSTTSASSVFPSMTTQLDSSTMVNMPAPSETIPKIANVTVTPKMPSVGQKKPLEALGSSL 417
Query: 212 PPARPTDK 235
PP+R K
Sbjct: 418 PPSRKKQK 425
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 414 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 313
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 333 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 229
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 107 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 205
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 435 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 310
L+P+LS + C+S LT V ML+ A+TT++P + P
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 384 ISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVP 280
IS ++ +++GA TT ++PVST+PT P
Sbjct: 384 ISASISKGKLVSGATTTTHSSGSSPVSTIPTFANP 418
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 313 CVETRYHCCLCPRQHHY*SQIC 378
C R+HC LC R+ +Y S C
Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94
>At2g26870.1 68415.m03224 phosphoesterase family protein low
similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
precursor (EC 3.1.4.3) (Phosphatidylcholine
cholinephosphohydrolase) {Burkholderia pseudomallei};
contains Pfam profile PF04185: Phosphoesterase family
Length = 514
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Frame = +2
Query: 20 KYPHTSRRLATTQLLSLSCPFLD------GTXDNML----EPSTKMPWFKGWQVERKEGK 169
+Y H+S +L +LS PFL GT +N+L EP T P V+ + G+
Sbjct: 372 EYEHSSIPATVKKLFNLSSPFLTKRDEWAGTFENILQIRKEPRTDCPETLPEPVKIRMGE 431
Query: 170 ADGKCLI 190
A+ K L+
Sbjct: 432 ANEKALL 438
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 329 YLVSTHQFQLCRRARYQYHRFCIRLA 252
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 158 KEGKADGKCLIEALDAILPPARPTDKP 238
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 158 KEGKADGKCLIEALDAILPPARPTDKP 238
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
similar to GT-2 factor [Arabidopsis thaliana GI:416490
Length = 619
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 391 VVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGH 287
++H H D+ G G W T + +D H
Sbjct: 60 IIHHHHHHHHHDIKDGGATTGEWIGQTDHDDSDNH 94
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 150 TCHPLNQGILVEGSNMLSXVPSRNGHESDSSWVVANL 40
T HPL + I + + RNG+ D+SW++ ++
Sbjct: 496 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDM 532
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -3
Query: 291 GTVPIPPILYTSCRGRRRGLSVGRAGGRM----ASRASMRHFPSAL 166
G +P PP YT RR S GG M RA +R PS L
Sbjct: 40 GLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWL 85
>At1g56140.1 68414.m06446 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1032
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -1
Query: 125 FWLKAPTCCLPCHPEMGTKATAAGL*PIF 39
FW TCC+P G +A G P F
Sbjct: 589 FWAGKGTCCIPIQGAYGPLISAVGATPDF 617
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 126 CLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKSVV 278
C+ S D K+ +L + A PS LP P C+ P + TK VV
Sbjct: 32 CVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV-TKPVV 81
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 126 CLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKSVV 278
C+ S D K+ +L + A PS LP P C+ P + TK VV
Sbjct: 32 CVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV-TKPVV 81
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 201 MPSCHLPAPLTSPC 242
+PSC LP P+ PC
Sbjct: 655 VPSCQLPCPIPQPC 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,203
Number of Sequences: 28952
Number of extensions: 282957
Number of successful extensions: 1038
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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