Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31891
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 351 3e-98
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 205 3e-54
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 188 3e-49
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 145 3e-36
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 106 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 102 3e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 92 5e-20
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 2e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.9
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 8.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 351 bits (864), Expect = 3e-98
Identities = 159/171 (92%), Positives = 167/171 (97%)
Frame = +3
Query: 3 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 182
AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGIL
Sbjct: 6 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 183 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 362
TLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FE
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFE 125
Query: 363 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 515
TFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+
Sbjct: 126 TFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 205 bits (500), Expect = 3e-54
Identities = 92/169 (54%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Frame = +3
Query: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 188
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 189 KYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 365
+ PIE GII NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 366 FNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 512
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 188 bits (459), Expect = 3e-49
Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 2/172 (1%)
Frame = +3
Query: 3 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 176
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 177 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 356
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 357 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 512
FE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 145 bits (352), Expect = 3e-36
Identities = 82/200 (41%), Positives = 113/200 (56%), Gaps = 32/200 (16%)
Frame = +3
Query: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 137
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 138 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 296
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 297 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDS 452
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 453 GDGVSHTVPIYEGYALPHAI 512
GDGV+H +P+ EGY + +I
Sbjct: 187 GDGVTHIIPVAEGYVIGSSI 206
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 106 bits (254), Expect = 2e-24
Identities = 55/164 (33%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Frame = +3
Query: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 188
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 189 -KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 365
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 366 FNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 491
+N+P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 102 bits (245), Expect = 3e-23
Identities = 57/166 (34%), Positives = 88/166 (53%)
Frame = +3
Query: 3 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 182
+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S G +
Sbjct: 12 SAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-M 63
Query: 183 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 362
+K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFE 123
Query: 363 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 500
+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 124 SLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 91.9 bits (218), Expect = 5e-20
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Frame = +3
Query: 6 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-- 179
+LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q I
Sbjct: 12 SLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPG 65
Query: 180 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 359
+ +K +GII +W+ W +L+V P E+ +++TE NP++ R+++ + F
Sbjct: 66 MEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAF 125
Query: 360 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 512
E + PA Y+ QAV +A+ ++T +++D G + P+ +G + I
Sbjct: 126 EQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 2e-08
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 195 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 362
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 363 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 491
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.5 bits (83), Expect = 0.001
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 6/174 (3%)
Frame = +3
Query: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 188
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 189 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 356
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 357 FETFNSPAMYVAIQAVLSLYASGRTTGIVLD--SGDGVSHTVPIYEGYALPHAI 512
FE F A A L + G T D +G + I GY+ H I
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHII 171
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 54 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 197
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 255 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 398
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 297 LLTEAPLNPKANREKMTQIMFETFN 371
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 97 RPTMDGKTARGASSPAKPALHMPEPLS 17
RP+ DG+ A G A P++ P P+S
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPVS 976
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 250 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFWPIPTITPWW 104
WC+ S + SQ+ + +G F PL L WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQISSLSN----PLITPWW 346
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 114 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 200
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 21 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 173
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 218 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 114
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +1
Query: 466 PTPYPSTKVTLC-PTP 510
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 450 SGDGVSHTVPIYEGYALP 503
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,064
Number of Sequences: 5004
Number of extensions: 39263
Number of successful extensions: 164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -