Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31890
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0865 + 8238521-8238810,8239115-8239304,8239406-8239606,823...    28   3.9  
11_03_0079 + 9669666-9669728,9670779-9672545                           27   6.8  
03_06_0755 - 36029836-36030123,36030352-36030444,36030601-360306...    27   6.8  

>12_01_0865 +
           8238521-8238810,8239115-8239304,8239406-8239606,
           8239715-8239954
          Length = 306

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 201 LMISLGSSDRLNTIAGKFDPYE 136
           +MI  GSS+ L  ++G F PYE
Sbjct: 226 IMIEFGSSEFLKEVSGTFGPYE 247


>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 219 LHVRKIQCLHNVLPPVIFRPCVP*IMTIYTMFSMCPDICLL 341
           LH R   CLH +   ++   C P  +T  T+FS+C    LL
Sbjct: 298 LHNRVEPCLH-LFASMMLSSCKPNDITFATLFSVCTKHALL 337


>03_06_0755 -
           36029836-36030123,36030352-36030444,36030601-36030676,
           36030755-36030880,36030957-36031013,36031132-36031253
          Length = 253

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 242 LAQCPTTSNI*TLCSMNNDNIHY 310
           LA CP T+N  + C    D+IHY
Sbjct: 76  LALCPATNNCVSTCEDITDSIHY 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,088
Number of Sequences: 37544
Number of extensions: 200321
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)