Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31890
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 35 0.046
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 35 0.046
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 35 0.046
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 35 0.046
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 35 0.046
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 35 0.046
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 31 0.56
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 30 0.98
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5) 29 3.0
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 27 6.9
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 13 VNCNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 69 VNCNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 637 VNCNTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 48 VNCNTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 10 VNCNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 50 VNCNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 1888 VNCNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 48 VNCNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 10 VNCNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 42 VNCNTTHYRANW 53
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 91 VNCNTTHYRANW 102
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 69 VNCNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 80 VNCNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 56 VNCNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 516 VNCNTTHYRANW 481
VNCNTTHYRANW
Sbjct: 80 VNCNTTHYRANW 91
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 460 TRGGARYPIRPIVSRITIH 516
T GGA PIRPIVSRITIH
Sbjct: 34 TDGGA--PIRPIVSRITIH 50
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 516 VNCNTTHYRAN 484
VNCNTTHYRAN
Sbjct: 87 VNCNTTHYRAN 97
>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 516 VNCNTTHYRAN 484
VNCNTTHYRAN
Sbjct: 30 VNCNTTHYRAN 40
>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
Length = 131
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 460 TRGGARYPIRPIVSRITIH 516
T GGA PIRPIVS ITIH
Sbjct: 36 TVGGA--PIRPIVSHITIH 52
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 155 PAMVFNLSLEPREIIKVKFITASRQKNTVLAQCPTT 262
P ++ + E +EI+ V F TAS + VL QC T
Sbjct: 331 PIVIDDKIAEIKEIVFVHFPTASSAREAVLRQCHKT 366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,507
Number of Sequences: 59808
Number of extensions: 246740
Number of successful extensions: 393
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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