Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31888
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.30 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   0.70 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   2.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   2.8  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   4.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +3

Query: 285 EEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSGTAQQKLLEAQQSADENNRMCKVLE 464
           +E+EK+L+  EAE      K ++  ED +K + +     +   E + +  E+ +  K ++
Sbjct: 217 KEREKELSDDEAE----EEKKEEEGEDKDKDKPKIEDVGED--EDEDTKKEDKKKKKTIK 270

Query: 465 NRAQQDEE 488
            +  +DEE
Sbjct: 271 EKYTEDEE 278


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 333 LNRKVQQIEEDLEKSEERSGTAQQKLLEAQQSADENNRMCKVLEN 467
           LNR+V QI++D+E  +  S      + +   + DE  R   + EN
Sbjct: 294 LNREVDQIKQDVEDLKRWSDRIYAAIHQGSVT-DERGRSITLTEN 337


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 270 PAPACSCSGSGLPPPGRASSGVRGLPRLP 184
           P P+    G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLPLPQVP 181


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 270 PAPACSCSGSGLPPPGRASSGVRGLPRLP 184
           P P+    G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVP 181


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 258 CSCSGSGLPPPGRASSGVRGLPRLPSQHG 172
           C   G   P PG  S  V G P + S HG
Sbjct: 131 CLSGGPKHPDPG--SLQVPGAPMMMSSHG 157


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 189 NEEVRELQKKLAQVEED 239
           N+E+R  ++K  +VEED
Sbjct: 98  NQEIRGPKRKTWKVEED 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,117
Number of Sequences: 336
Number of extensions: 1799
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)