Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31887
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02640.2 68417.m00359 bZIP transcription factor family protei...    30   0.80 
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    30   0.80 
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   1.4  
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit...    29   1.4  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   3.2  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   3.2  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   4.3  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    28   4.3  
At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei...    27   7.5  
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl...    27   9.9  

>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 500
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGE 259


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 500
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGE 253


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = +3

Query: 390 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFV 506
           +++A L+ ++ +LE  +++K  EIS+  SQ+ +L+ + +
Sbjct: 879 QQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917


>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
           gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 145

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 327 KPKNIDDANEDTIKRVCKDYHERIARLED 413
           K KN++ A EDT+    K+Y + +A+L+D
Sbjct: 53  KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 280 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 441
           +++ L+  +S R G+    +  TPT+ +     K T+NA+ +L+      N++L
Sbjct: 40  SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 337 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 456
           TLT  TK+   G ++  + AS + + + S+WNTS     W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 396 IARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 515
           ++ L   K  L  ++++KD EIS+ NS +     K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 357 DTIKRVCKDYHERIARLEDEKFDLEYIV 440
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
           (DiGeorge syndrome critical region 14) (ES2 protein)
           (Swiss-Prot:Q96DF8) [Homo sapiens]
          Length = 508

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 342 DDANEDTIKRVC-KDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 500
           +DA  + I+++  +DY   I +L D    ++ +  R  ++I D   ++ + RGK
Sbjct: 50  EDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKTRDPIQIRDAQLKIIERRGK 103


>At1g17220.1 68414.m02098 translation initiation factor IF-2,
           chloroplast, putative similar to SP|P57997|IF2C_PHAVU
           Translation initiation factor IF-2, chloroplast
           precursor (PvIF2cp) {Phaseolus vulgaris}
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 327 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 473
           +P  +   + + +K +C+DY   +   +  K + E   KR+  +  DL+
Sbjct: 448 RPDGVHTLDREMVKMICRDYDVEVLDADSVKVE-EMAKKRQTFDEEDLD 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,710,455
Number of Sequences: 28952
Number of extensions: 110773
Number of successful extensions: 388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)