Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31886
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 29 0.41
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 26 2.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 2.9
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 3.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 5.1
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.1
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 5.1
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 6.7
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 6.7
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 25 8.9
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 8.9
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 318 QNTCTLTRNQTEPTESSGRPQSSSIHP 398
+NT ++ R +T PT+SSG ++ HP
Sbjct: 106 ENTSSVKRQKTLPTQSSGEEEAKYSHP 132
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +3
Query: 213 VRSISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSS 386
V ++ N+ L ++ +VP+ HP+ +N S + + + P +S Q+S
Sbjct: 349 VTTVPSNSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNS 406
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +2
Query: 29 MLVLLATSRESSSSVIWICNFFLMRVTSDFNLVSAIRTINVD----FLGRKINNYHKKAA 196
+L + T+ +SS + + +R D N S++R + V+ FLG + NN A
Sbjct: 298 LLAQVCTNTDSSRNAGNAILYQAVRTILDLNSDSSLRVLGVNILAKFLGNRDNNTRYVAL 357
Query: 197 SK*KVSTFNKRKCYDAARSTSRRC 268
+ K+ ++ RST C
Sbjct: 358 NMLKLVVNSEENAVQRHRSTILAC 381
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 216 RSISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 395
R+ E+ T L+ A+P S PV P+ QN+ ++ P E G + SIH
Sbjct: 417 RAPEESPMTFLQKKMAALPTSSPVRPMLKPTLQLQNS---PLSKLVPQE-VGNKVNDSIH 472
Query: 396 PLHESPA 416
P+
Sbjct: 473 TTSNQPS 479
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 352 NQPRALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVSEGDVKLDKKVGDSVAADE 516
+QP L + + +++ QD+ P+FPDS E D VG S++ +E
Sbjct: 298 DQPACLAFACSLTHANSKRSIMLPQDID-PTFPDSEPEDDGHASSTVG-SLSKEE 350
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 245 ARSTSRRCTGVRASPSASSQQLKRPKYLHP-YTQPN 349
A +S T ASP+ +Q +P Y P Y+QP+
Sbjct: 71 AGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPS 106
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 246 LEAHPDAVPASG-PVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 395
++A ++P SG + P++ N+S++ + + N TESS RP SS ++
Sbjct: 145 MQASVHSLPLSGCSIGPVRTNHSSSLSNSS---NSLLQTESSLRPNSSFVN 192
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +3
Query: 219 SISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHP 398
S + N TT A P N++ Q+T TRN T S+G +
Sbjct: 143 STTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGA 202
Query: 399 LHES 410
H S
Sbjct: 203 SHRS 206
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 228 ENATTLLEAHPDA--VPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 395
E AT+ LE ++ P P + +NS N T PT S+G P +S+H
Sbjct: 22 EAATSRLEDLVESGHKPLPNMHRPSRDSNSQTHNISFNIGTPTAPTVSTGSPAVASLH 79
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 276 SGPVHPLQVNNSN-AQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 452
+GP P+ +N SN A + + P S S+S PL P+ + HS F
Sbjct: 58 TGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLRRLPSVQ----HSTFDD 113
Query: 453 L 455
L
Sbjct: 114 L 114
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 430 VTTPSFPDSVSEGDV-KLDKKVGDSVAADE 516
+ TP FP+S++EG + + K+ G+ V DE
Sbjct: 45 IKTPPFPESITEGTLAQWLKQPGEYVNKDE 74
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 225 SENATTLLEAHPDAVPASGPVHP 293
S+ A L+E + DAVPAS P
Sbjct: 924 SDKAPDLIELNRDAVPASADTEP 946
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 38 LLATSRESSSSVIWICNFFLMRVTSDFNLVSA 133
+L TS E S VI CN +DFN S+
Sbjct: 301 VLVTSPEEVSQVIEQCNAIRKTAATDFNTYSS 332
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 92 RSCKSRLLNWNSLLMWPTRPTLTSRDCLL 6
+ C S + W ++++ P LT R C++
Sbjct: 107 KDCLSNAIAWRNIIIGPLSEELTFRCCIV 135
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 351 EPTES-SGRPQSSSIHPLHESPA 416
EP E G P+ +S+HP+ +PA
Sbjct: 218 EPAEGLPGTPKPTSLHPVFSNPA 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,431
Number of Sequences: 5004
Number of extensions: 44739
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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