Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31886
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 34   0.080
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)             30   0.98 
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     28   5.3  
SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)                   27   6.9  
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_17814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    27   9.2  

>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +1

Query: 430 VTTPSFPDSVSEGDVKLDKKVGDSVAADE 516
           V TP F +SV+EGD++ D+ VGD+VA DE
Sbjct: 50  VNTPPFAESVTEGDIRWDQAVGDAVAEDE 78


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = -1

Query: 132  AETKLKSEVTRIKKKLQIQITELELSLDVANKTNIDLQR 16
            +E K K+E  R++KK +    E+E++L+ + K N +LQ+
Sbjct: 1639 SEVKSKNEHARLRKKFETDCNEMEINLENSMKANQELQK 1677


>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 216 RSISENATTLLEAHPDA-VPASGPVHPLQVNNSNA--QNTCTLTRNQTEPTESSG 371
           R I  +  TLL +HPD  +P +G  +P     S A  +  C LT++    T  SG
Sbjct: 83  RHIQSSVDTLLTSHPDCLIPVTGDFNPTSTRLSAATIRRKCGLTQSIKVLTRDSG 137


>SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)
          Length = 364

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 SGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSS 389
           SG    L+V +S+  NT T+T+ Q+E    S RP  +S
Sbjct: 5   SGSPSSLEVISSDGNNTNTITQGQSENDTGSSRPGGTS 42


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 TLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQS 383
           T + +HP A   + P H  QV ++      TLTR  ++P    G  +S
Sbjct: 210 TRVPSHPCATHGTTPSHGYQVTHALYARYDTLTRVSSQPWSRQGTKRS 257


>SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +3

Query: 270 PASGPVHPLQVNNSNAQNTCTLTR-----NQTEPTESSGRPQSSSIHPLHE-SPACRARC 431
           P    + PL+  + N++N C   R      +  P   + RP   +I PL E SP     C
Sbjct: 32  PTQRTIAPLREQSPNSENNCPTQRTIAPLREQLPHSENNRPTQRTIAPLREQSPHSENNC 91


>SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 342 NQTEPTESSGRPQSSSIHPLHESPACRARCDHSKFP 449
           N T P   +G PQ   I P+  S  C  RC   + P
Sbjct: 881 NYTRPAFLAGDPQVVPIVPVSRSIECACRCTRVQVP 916


>SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)
          Length = 182

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 300 VNNS--NAQNTCTLTRNQTEPTESSGRPQSSSIHPLHES 410
           VNNS     N+C    N  EP  +S  P ++S  P++ S
Sbjct: 45  VNNSCEPVNNSCEHVNNSREPVNNSREPVNNSREPVNNS 83


>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 318 QNTCTLTRNQTEPTESSGRPQSSSIHPLHE-SPACRARCDHSKF-PGL 455
           ++ C L   Q +PTE   +   S +H  H+   AC  R   + F PG+
Sbjct: 218 EDVCRLDLEQVDPTEFLRKTLMSRVHASHQGEQACLRRARDALFWPGM 265


>SB_17814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 129 ETKLKSEVTRIKKKLQIQITELELSLDVANK 37
           E KL++     +KK ++ + +LE  L+ ANK
Sbjct: 52  ERKLRASAVNARKKQELDLRDLEDQLEAANK 82


>SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1380

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
 Frame = +1

Query: 247  SKHIQTLYRR--QGQSIRFKSTTQTPKILAPLHAT-------KLNQPRALVAHNQVASIH 399
            SK  Q L+ +  Q Q  + K   Q PKI      T       K N+P   V   +    +
Sbjct: 919  SKENQQLFHKCTQAQKKKAKRKNQRPKISQRKSRTGKQECQKKENEPELSVIGKESILHN 978

Query: 400  FTNPLLVEQDVTTPSFPDSVSEGDVKLDK 486
            F    +VEQDV +          D + DK
Sbjct: 979  FRTEAIVEQDVVSAKQYPMTESSDARSDK 1007


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 500 LSPTFLSNLTSPSETESGKLGVVTSCSTSRG 408
           ++PT +S+ TSP +T+S  + V T  ++S G
Sbjct: 261 MTPTLMSSSTSPVKTKSPNVTVSTKPASSSG 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,847
Number of Sequences: 59808
Number of extensions: 335932
Number of successful extensions: 1478
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)