Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31885
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L46721-1|AAC41774.1|  164|Homo sapiens mucin protein.                  31   3.2  
X15218-1|CAA33288.1|  728|Homo sapiens protein ( Human ski oncog...    30   5.5  
AY334557-1|AAP97864.1|  168|Homo sapiens ski oncoprotein protein.      30   5.5  
AL590822-8|CAI12482.1|  728|Homo sapiens v-ski sarcoma viral onc...    30   5.5  
AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.              30   5.5  

>L46721-1|AAC41774.1|  164|Homo sapiens mucin protein.
          Length = 164

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 167 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPT 298
           P  TT+ T   T  +   P  S T AP T    +  ++ TLAPT
Sbjct: 41  PVPTTSTTSAPTTSTTSAPTTSTTSAPTTSTPSAPTTSTTLAPT 84


>X15218-1|CAA33288.1|  728|Homo sapiens protein ( Human ski oncogene
           mRNA. ).
          Length = 728

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 167 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 277
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 443 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 480


>AY334557-1|AAP97864.1|  168|Homo sapiens ski oncoprotein protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 167 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 277
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 120 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 157


>AL590822-8|CAI12482.1|  728|Homo sapiens v-ski sarcoma viral
           oncogene homolog (avian) protein.
          Length = 728

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 167 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 277
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 443 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 480


>AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 407 EKKKKKNSRGGPV 445
           +KKKKKNSRGGPV
Sbjct: 45  KKKKKKNSRGGPV 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,961,765
Number of Sequences: 237096
Number of extensions: 1093126
Number of successful extensions: 6456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6456
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)