Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31883
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 341 3e-94
SB_56| Best HMM Match : Actin (HMM E-Value=0) 340 4e-94
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 340 4e-94
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 339 7e-94
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 338 2e-93
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 267 3e-72
SB_54| Best HMM Match : Actin (HMM E-Value=0) 197 5e-51
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 3e-48
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 166 8e-42
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 140 5e-34
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 89 3e-18
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 78 5e-15
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 60 8e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 48 5e-06
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 3.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 28 4.0
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 5.3
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 6.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06) 27 9.2
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 27 9.2
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 341 bits (837), Expect = 3e-94
Identities = 160/172 (93%), Positives = 168/172 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC
Sbjct: 121 GVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 181 YVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 240
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKI
Sbjct: 241 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKI 292
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 340 bits (836), Expect = 4e-94
Identities = 160/172 (93%), Positives = 168/172 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 218 YVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 277
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKI
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKI 329
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 340 bits (836), Expect = 4e-94
Identities = 160/172 (93%), Positives = 168/172 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC
Sbjct: 159 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 218
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 219 YVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 278
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKI
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKI 330
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 339 bits (834), Expect = 7e-94
Identities = 159/172 (92%), Positives = 168/172 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC
Sbjct: 159 GVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 218
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 219 YVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 278
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKI
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKI 330
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 338 bits (830), Expect = 2e-93
Identities = 160/172 (93%), Positives = 168/172 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLA 217
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YVALDFEQEMATAAAS+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 218 YVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 277
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKI
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKI 329
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 267 bits (655), Expect = 3e-72
Identities = 127/146 (86%), Positives = 135/146 (92%)
Frame = +1
Query: 79 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP 258
D + + I ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+S+EKSYELP
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELP 217
Query: 259 DGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGT 438
DGQVITIGNERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRKDLYANTVMSGGT
Sbjct: 218 DGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGT 277
Query: 439 TMYPGIADRMQKEITALAPSTIKIKI 516
TMYPG+ADRMQKEI+ALAPST+KIKI
Sbjct: 278 TMYPGLADRMQKEISALAPSTMKIKI 303
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 197 bits (480), Expect = 5e-51
Identities = 87/144 (60%), Positives = 112/144 (77%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +TAE++I+RD+KE LC
Sbjct: 2203 GVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLC 2262
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
Y A+D+E+E+ A S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+
Sbjct: 2263 YCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHES 2322
Query: 361 VYNSIMKCDVDIRKDLYANTVMSG 432
++ SI KCD+D+R +L+ N V+SG
Sbjct: 2323 IFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 188 bits (457), Expect = 3e-48
Identities = 82/163 (50%), Positives = 114/163 (69%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RGY+F TA+ E VR +KEKLC
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLC 221
Query: 181 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 360
YV + EQE A +T L + Y LPDG+V+ + ERF PEALFQP + +E G+ E
Sbjct: 222 YVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAEL 281
Query: 361 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL 489
++N+I D+D R + Y + V+SGG+TMYPG+ R+++EI L
Sbjct: 282 LFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQL 324
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 166 bits (404), Expect = 8e-42
Identities = 74/99 (74%), Positives = 89/99 (89%)
Frame = +1
Query: 220 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 399
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 400 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 516
KDLY+N V+SGG+TM+PGIADRMQKEI LA +++K+K+
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKV 103
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 140 bits (340), Expect = 5e-34
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLC
Sbjct: 37 GVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLC 96
Query: 181 YVALDFEQEM 210
YVALDF QE+
Sbjct: 97 YVALDFYQEI 106
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +1
Query: 22 IYEGYALPHAILRLDLAGRDLTDYLMKILTE-RGYSFTTTAEREIVRDIKEKLCYVALDF 198
IYEG+ L H + L++ G LT+ L + L + RG++FT+++ +IV DIKEK+CY++ D
Sbjct: 795 IYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHNFTSSSGWQIVNDIKEKICYLSKDH 854
Query: 199 EQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 330
+E+ + L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 855 LKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 77.8 bits (183), Expect = 5e-15
Identities = 33/58 (56%), Positives = 48/58 (82%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 174
GVSH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 184 GVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 349 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 453
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 60.5 bits (140), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 447
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 448 PGIADRMQKEITALAPSTIKI 510
R+Q++I + +K+
Sbjct: 256 RDFGRRLQRDIKRTVDARLKM 276
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +1
Query: 1 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 180
GV+H +P+ EGY + I + +AGRD+T ++ ++L ER E + IKE+
Sbjct: 71 GVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWG 130
Query: 181 YVALDFEQEMA 213
Y+ D +E A
Sbjct: 131 YICPDIAKEFA 141
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 48.0 bits (109), Expect = 5e-06
Identities = 17/62 (27%), Positives = 38/62 (61%)
Frame = +1
Query: 331 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 510
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 511 KI 516
K+
Sbjct: 206 KL 207
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 16 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 114
VP+++GY L AI+R LAG +T ++ E
Sbjct: 96 VPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEE 128
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 337 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPS 498
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQS 107
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 301 PEALFQPSFLGMESCGIHETV 363
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 345 RHPRDRVQLHHEVRRRHP*GPVRQH--RHVRWYHHVPRYRRQDAE 473
R P+DR + HH RRRH R+H H R H ++ DA+
Sbjct: 830 RPPQDRHRRHHH-RRRHHNNKHRKHSREHSRRRHQRKHHKGNDAQ 873
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 321 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 494
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 495 LDHQ 506
H+
Sbjct: 954 RKHE 957
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 415 NTVMSGGTTMYPGIADRMQKEITALAP 495
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +3
Query: 300 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 479
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 480 HRPRALDHQ 506
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 142 EREIVRDIKEKLCYVALDFEQEMATA---AASTSLEKSYELPD 261
E ++ +KE CYV+ F ++M A ++ + Y LPD
Sbjct: 392 ETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVLPD 434
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 166 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 306
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 490
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 375 HEVRRRHP*GPVRQHRHVRWYHHVP----RYRRQDAE 473
H R+H P R HR+ R + +P RY R+DA+
Sbjct: 307 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKDAK 343
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 306 GSLPAFLP-GYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP----RYRRQDA 470
G++ +LP GI + + + H R+H P R HR+ R + +P RY R+ A
Sbjct: 185 GNMQRYLPESIGIPGNMQRYLTRIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKHA 244
Query: 471 E 473
+
Sbjct: 245 K 245
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 351 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALD 500
PRDR + E RRR P R+ R + Y PR RR+ R R D
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRD 901
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +3
Query: 333 YGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDH 482
Y +++PR R HH +H + H H +HH + Q H
Sbjct: 247 YHKLKNPRHRYHHHHHHHHQH--NHHQHHHHHHHHHHNHHHHHQQHHHHH 294
>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
Length = 583
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +1
Query: 46 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAA 225
H I LD+ G ++ + + GY T++ + + K ++ Y AL + + + +
Sbjct: 102 HNITELDICGTEIPFSELFASSLEGYECTSSLRKLNISHAKGEIDYAALGYFKNLTSLDV 161
Query: 226 STSLEKSYEL 255
S ++ ++L
Sbjct: 162 SHNMFSDFDL 171
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 8 PTPYPSTKVTLCPTPSSVW 64
PTP+P+T V +P S+W
Sbjct: 1373 PTPFPTTPVPPTTSPPSIW 1391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,114
Number of Sequences: 59808
Number of extensions: 308641
Number of successful extensions: 1032
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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