Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31882
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    50   2e-07
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    27   1.3  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   1.7  
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    25   5.1  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    25   5.1  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   5.1  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    25   5.1  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    25   5.1  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.9  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.9  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 31/92 (33%), Positives = 48/92 (52%)
 Frame = +2

Query: 239 LTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTLSL 418
           L+ KEKK L+   +P+ +  Y     ++ +W  YI EV+A   G         E+L   L
Sbjct: 74  LSSKEKKKLQLNVVPKIA-DYSQFKHLHSMWCSYILEVIAGCTG---------ESLMAKL 123

Query: 419 YKADYHGCMLTVVRSKCPSFINKTGICIMDTK 514
            KA+Y G  + V+RSK  + +   GICI ++K
Sbjct: 124 AKAEYQGAYMQVLRSKSTTRVGLEGICIHESK 155


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 461 NGLPLTCIHDSPLYTNLRLTFPN 393
           NG P++  HD PLY N   T  N
Sbjct: 24  NGTPISSWHDIPLYANAEKTILN 46


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +2

Query: 335 EYITEVLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVR 460
           E+   + ++++ + E   ++W+TL L   ++ + GC ++V R
Sbjct: 169 EWQQSIKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCR 210


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 266
           R Q+Q+    K+   K  +    RN +  +  R   +SNK +N +RK+ ++ L      F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262

Query: 267 DFTI 278
             +I
Sbjct: 263 KCSI 266


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 266
           R Q+Q+    K+   K  +    RN +  +  R   +SNK +N +RK+ ++ L      F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262

Query: 267 DFTI 278
             +I
Sbjct: 263 KCSI 266


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 14  LII*NKTSLTF--RCKMEETTDSFNQQAANSIINFLKTNVPKNEVQKID 154
           LII  K  + F   C+ +E   + ++   ++++NF+KT  P+   +K +
Sbjct: 384 LIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNFMKTYFPREIKEKFE 432


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 266
           R Q+Q+    K+   K  +    RN +  +  R   +SNK +N +RK+ ++ L      F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262

Query: 267 DFTI 278
             +I
Sbjct: 263 KCSI 266


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 266
           R Q+Q+    K+   K  +    RN +  +  R   +SNK +N +RK+ ++ L      F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262

Query: 267 DFTI 278
             +I
Sbjct: 263 KCSI 266


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 470 DIWNGLPLTCIHDSPLYT 417
           ++WN L   C+H  P Y+
Sbjct: 11  EVWNDLEKGCLHSCPSYS 28


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 470 DIWNGLPLTCIHDSPLYT 417
           ++WN L   C+H  P Y+
Sbjct: 11  EVWNDLEKGCLHSCPSYS 28


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 129 LKTRSKKLIR---N*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKH 263
           LKT SK+L+    + K +S  + S  SNKN ++ RK       K  KH
Sbjct: 163 LKTLSKRLLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKSNSKHAKH 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,563
Number of Sequences: 5004
Number of extensions: 46343
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)